Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   MSA_RS05350 Genome accession   NC_021486
Coordinates   990672..991742 (-) Length   356 a.a.
NCBI ID   WP_016480735.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 985672..996742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS05330 (MSA_10950) - 986212..986964 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  MSA_RS05335 (MSA_10960) - 986966..988921 (+) 1956 WP_000499554.1 FtsX-like permease family protein -
  MSA_RS05340 (MSA_10970) braR 989031..989699 (+) 669 WP_000076874.1 response regulator transcription factor Regulator
  MSA_RS05345 (MSA_10980) - 989696..990634 (+) 939 WP_041165680.1 sensor histidine kinase -
  MSA_RS05350 (MSA_10990) xerS 990672..991742 (-) 1071 WP_016480735.1 tyrosine recombinase XerS Machinery gene
  MSA_RS05355 (MSA_11000) - 992225..993442 (+) 1218 Protein_967 peptide ABC transporter substrate-binding protein -
  MSA_RS05360 (MSA_11010) - 993475..994248 (-) 774 WP_016480737.1 DUF3307 domain-containing protein -
  MSA_RS05365 (MSA_11020) - 994238..994924 (-) 687 WP_016480738.1 SatD family protein -
  MSA_RS05370 (MSA_11030) ffh 994991..996556 (-) 1566 WP_000863591.1 signal recognition particle protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41335.47 Da        Isoelectric Point: 9.3616

>NTDB_id=49087 MSA_RS05350 WP_016480735.1 990672..991742(-) (xerS) [Streptococcus agalactiae ILRI005]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGNETIEFLEYIDCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVSVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=49087 MSA_RS05350 WP_016480735.1 990672..991742(-) (xerS) [Streptococcus agalactiae ILRI005]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATATTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACGCTCTACGAATATTTAAAAGAATATAGACGTTTTCTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCACATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAGAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAAGTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAGATTGTGAATATCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGGGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGGGGGAAAAGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAGCCCTACCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCTCTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATGCTTCAAGTGTAGAGAAAATGGTTGCTA
AGTATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATCAGTTAGCCACCAACTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGACAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(184-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834

Multiple sequence alignment