Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   MSA_RS05340 Genome accession   NC_021486
Coordinates   989031..989699 (+) Length   222 a.a.
NCBI ID   WP_000076874.1    Uniprot ID   X5JZS1
Organism   Streptococcus agalactiae ILRI005     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 984031..994699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS05320 (MSA_10930) - 984570..985058 (-) 489 WP_001140791.1 PASTA domain-containing protein -
  MSA_RS05325 (MSA_10940) - 985224..986186 (+) 963 WP_016480733.1 S41 family peptidase -
  MSA_RS05330 (MSA_10950) - 986212..986964 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  MSA_RS05335 (MSA_10960) - 986966..988921 (+) 1956 WP_000499554.1 FtsX-like permease family protein -
  MSA_RS05340 (MSA_10970) braR 989031..989699 (+) 669 WP_000076874.1 response regulator transcription factor Regulator
  MSA_RS05345 (MSA_10980) - 989696..990634 (+) 939 WP_041165680.1 sensor histidine kinase -
  MSA_RS05350 (MSA_10990) xerS 990672..991742 (-) 1071 WP_016480735.1 tyrosine recombinase XerS Machinery gene
  MSA_RS05355 (MSA_11000) - 992225..993442 (+) 1218 Protein_967 peptide ABC transporter substrate-binding protein -
  MSA_RS05360 (MSA_11010) - 993475..994248 (-) 774 WP_016480737.1 DUF3307 domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25403.45 Da        Isoelectric Point: 5.0693

>NTDB_id=49086 MSA_RS05340 WP_000076874.1 989031..989699(+) (braR) [Streptococcus agalactiae ILRI005]
MSQEQGKIYIVEDDMTIVSLLKDHLSASYHVSSVSNFRDVKQEIIAFQPDLILMDITLPYFNGFYWTAELRKFLTIPIIF
ISSSNDEMDMVMALNMGGDDFISKPFSLAVLDAKLTAILRRSQQFIQQELTFGGFTLTREGLLSSQDKEVILSPTENKIL
SILLMHPKQVVSKESLLEKLWENDSFIDQNTLNVNMTRLRKKIVPIGFDYIHTVRGVGYLLQ

Nucleotide


Download         Length: 669 bp        

>NTDB_id=49086 MSA_RS05340 WP_000076874.1 989031..989699(+) (braR) [Streptococcus agalactiae ILRI005]
ATGTCACAAGAGCAAGGAAAAATTTATATTGTAGAAGATGATATGACGATTGTGTCACTTTTAAAAGATCATTTATCAGC
TAGCTATCATGTCTCTAGTGTCAGCAATTTTCGTGATGTGAAACAAGAAATTATCGCATTTCAACCCGATTTGATACTAA
TGGATATTACATTACCCTATTTTAATGGTTTTTACTGGACTGCAGAATTGCGTAAGTTTTTAACAATTCCTATTATTTTC
ATTTCATCTAGTAATGATGAAATGGATATGGTTATGGCATTAAATATGGGGGGTGATGACTTTATTTCAAAACCATTCTC
TCTAGCTGTATTAGATGCTAAGCTAACTGCTATTTTAAGGAGAAGTCAACAATTTATCCAACAGGAATTAACTTTTGGGG
GATTTACGTTGACAAGAGAAGGGTTATTGTCTAGCCAAGATAAAGAGGTTATTTTATCGCCAACAGAAAATAAAATCCTA
TCTATCTTGCTCATGCATCCTAAACAAGTAGTCTCAAAAGAGTCTCTATTAGAGAAACTTTGGGAAAATGATAGTTTTAT
TGATCAAAATACACTTAATGTTAATATGACACGCTTACGTAAAAAAATTGTCCCAATAGGTTTTGATTACATTCATACAG
TGAGAGGAGTTGGGTATTTACTACAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-115)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5DCL
  PDB 5DCM

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.248

98.198

0.464