Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KFQ18_RS05710 Genome accession   NZ_CP074356
Coordinates   1176532..1177269 (-) Length   245 a.a.
NCBI ID   WP_000197689.1    Uniprot ID   -
Organism   Escherichia coli strain XJ6.1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1171532..1182269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFQ18_RS05680 (KFQ18_05610) yfiL 1171690..1172055 (-) 366 WP_059341897.1 DUF2799 domain-containing protein -
  KFQ18_RS05685 (KFQ18_05615) aroF 1172265..1173335 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KFQ18_RS05690 (KFQ18_05620) tyrA 1173346..1174467 (+) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KFQ18_RS05695 (KFQ18_05625) pheA 1174510..1175670 (-) 1161 WP_000200137.1 bifunctional chorismate mutase/prephenate dehydratase -
  KFQ18_RS05700 (KFQ18_05630) pheL 1175769..1175816 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KFQ18_RS05705 (KFQ18_05635) raiA 1175920..1176261 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KFQ18_RS05710 (KFQ18_05640) comL 1176532..1177269 (-) 738 WP_000197689.1 outer membrane protein assembly factor BamD Machinery gene
  KFQ18_RS05715 (KFQ18_05645) rluD 1177404..1178384 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KFQ18_RS05720 (KFQ18_05650) yfiH 1178381..1179112 (+) 732 WP_000040154.1 purine nucleoside phosphorylase YfiH -
  KFQ18_RS05725 (KFQ18_05655) clpC 1179242..1181815 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27828.45 Da        Isoelectric Point: 7.9331

>NTDB_id=490841 KFQ18_RS05710 WP_000197689.1 1176532..1177269(-) (comL) [Escherichia coli strain XJ6.1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAKYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=490841 KFQ18_RS05710 WP_000197689.1 1176532..1177269(-) (comL) [Escherichia coli strain XJ6.1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCAAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTAATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376