Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KGQ53_RS20545 Genome accession   NZ_CP074120
Coordinates   4283274..4284011 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EC16     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4278274..4289011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGQ53_RS20515 yfiL 4278432..4278797 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  KGQ53_RS20520 aroF 4279007..4280077 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KGQ53_RS20525 tyrA 4280088..4281209 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KGQ53_RS20530 pheA 4281252..4282412 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  KGQ53_RS20535 pheL 4282511..4282558 (-) 48 WP_010723158.1 phe operon leader peptide -
  KGQ53_RS20540 raiA 4282662..4283003 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KGQ53_RS20545 comL 4283274..4284011 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KGQ53_RS20550 rluD 4284146..4285126 (+) 981 WP_000079099.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KGQ53_RS20555 yfiH 4285123..4285854 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  KGQ53_RS20560 clpC 4285984..4288557 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=490732 KGQ53_RS20545 WP_000197686.1 4283274..4284011(-) (comL) [Escherichia coli strain EC16]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=490732 KGQ53_RS20545 WP_000197686.1 4283274..4284011(-) (comL) [Escherichia coli strain EC16]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376