Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KE639_RS20395 Genome accession   NZ_CP074111
Coordinates   4410751..4412160 (-) Length   469 a.a.
NCBI ID   WP_102932190.1    Uniprot ID   A0ABW8BNC8
Organism   Streptomyces sp. V17-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4405751..4417160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE639_RS20370 (KE639_04068) - 4406094..4406771 (-) 678 WP_176154385.1 hypothetical protein -
  KE639_RS20375 (KE639_04069) - 4406759..4407292 (-) 534 WP_003975479.1 SigE family RNA polymerase sigma factor -
  KE639_RS20380 (KE639_04070) - 4407591..4408517 (-) 927 WP_125629511.1 A/G-specific adenine glycosylase -
  KE639_RS20385 (KE639_04071) - 4408676..4409524 (+) 849 WP_212730806.1 hypothetical protein -
  KE639_RS20390 (KE639_04072) disA 4409545..4410669 (-) 1125 WP_030404779.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  KE639_RS20395 (KE639_04073) radA/sms 4410751..4412160 (-) 1410 WP_102932190.1 DNA repair protein RadA Machinery gene
  KE639_RS20400 (KE639_04074) - 4412778..4414544 (+) 1767 WP_212730807.1 hypothetical protein -
  KE639_RS20405 (KE639_04075) - 4414849..4415661 (-) 813 WP_212730808.1 hypothetical protein -
  KE639_RS20410 (KE639_04076) - 4415733..4416665 (+) 933 WP_102927374.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49748.84 Da        Isoelectric Point: 7.7528

>NTDB_id=490619 KE639_RS20395 WP_102932190.1 4410751..4412160(-) (radA/sms) [Streptomyces sp. V17-9]
MAARTKSAKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSALPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPADPGKVPDGMKVLEVADMGDALRVLPRSRRREAPREEGDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=490619 KE639_RS20395 WP_102932190.1 4410751..4412160(-) (radA/sms) [Streptomyces sp. V17-9]
ATGGCTGCCCGTACGAAGTCCGCCAAGGAACGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCATGGGGCACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGTACGACCACGCCGGGGC
GCGTCACGACCTCCGCGCTGCCCATCGGCCAGGTGGACGGCCGGCAGGCGACCGCCCGTTCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGGGCCGTGGTGCTCGTCGCGGGAGAGCCCGGGGTCGGCAAGTCCACGCT
GCTCCTCGACGTGGCGGCCAAGTCCGCGAGCGACGAGCACCGGACGCTGTACGTCACCGGTGAGGAGTCGGCCAGCCAGG
TGCGGCTGCGGGCCGACCGGATCCACGCCATCGACGACCATCTGTATCTCGCCGCCGAGACCGACCTCGCGGCGGTGCTC
GGGCATCTGGACGCCGTCAAGCCGTCGCTGCTGATCCTGGACTCCGTGCAGACCGTCGCCTCGCCCGAGATCGACGGCGC
CCCGGGCGGCATGGCGCAGGTGCGGGAGGTGGCGGGGGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGCTGC
TGGTGGGCCACGTCACCAAGGACGGCGCCATCGCGGGCCCGCGGCTGCTTGAGCACCTCGTGGACGTCGTCCTGCATTTC
GAGGGCGACCGGCATGCGCGGCTGAGGCTGGTGCGGGGGGTCAAGAACCGGTACGGGACGACCGACGAGGTCGGCTGTTT
CGAGCTGCACGACGAAGGGATCACGGGGCTCGCCGATCCCAGCGGGCTGTTCCTCACCCGGCGGGCCGAGCCGGTGCCCG
GTACCTGTCTGACCGTCACCCTGGAGGGGCGGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGACTCTCAGATC
CCGTCGCCCCGGCGCACCACCTCGGGGCTCGAGACCTCGCGGGTGTCGATGATGCTGGCCGTGCTGGAGCAGCGCGGGCG
CATCAGCGCCCTGGGCAAGAGGGACATCTACAGCGCGACGGTGGGCGGGGTGAAGCTCTCCGAGCCGGCCGCCGACCTCG
CCGTCGCGCTGGCGTTGGCGAGTGCGGCCAGTGACACTCCGCTGCCCAAGAACCTCGTGGCGATCGGCGAGGTCGGGCTC
GCCGGAGAGGTGAGACGGGTCACGGGGGTGCAGCGCAGGCTCTCCGAGGCGCACCGGCTGGGCTTCACGCACGCCCTGGT
ACCGGCCGATCCGGGGAAGGTCCCTGACGGCATGAAGGTCCTGGAAGTCGCGGACATGGGGGACGCCCTGCGGGTGCTTC
CGCGCTCGCGTCGCCGAGAGGCCCCACGGGAGGAGGGGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus pneumoniae D39

42.889

95.949

0.412
  radA Streptococcus pneumoniae R6

42.889

95.949

0.412
  radA Streptococcus pneumoniae Rx1

42.889

95.949

0.412
  radA Streptococcus pneumoniae TIGR4

42.889

95.949

0.412
  radA Streptococcus mitis NCTC 12261

44.366

90.832

0.403
  radA Streptococcus mitis SK321

44.366

90.832

0.403