Detailed information NTG0049056

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: SESEC_RS05660
• Genome accession: NC_017582
• Coordinates: 1190038..1191267 (-)
• Length: 409 a.a.
• NCBI ID: WP_038674257.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus ATCC 35246
• Function: require for competence development (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	1183833..1189219	1190038..1191267	flank	819

Gene organization within MGE regions

Location: 1183833..1191267

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SESEC_RS05640 (SeseC_01410)	-	1183833..1185092 (+)	1260	WP_014622390.1	ISL3-like element ISSeq1 family transposase	-
SESEC_RS05645 (SeseC_01411)	hupY	1185308..1188316 (-)	3009	WP_014622933.1	leucine-rich repeat adhesin HupY/LrrG	-
SESEC_RS05650 (SeseC_01413)	tnpA	1188746..1189219 (-)	474	WP_014622935.1	IS200/IS605 family transposase	-
SESEC_RS05655 (SeseC_01415)	yihA	1189429..1190028 (-)	600	WP_012677890.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
SESEC_RS05660 (SeseC_01416)	clpX	1190038..1191267 (-)	1230	WP_038674257.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45114.60 Da
• Isoelectric Point: 4.6016

>NTDB_id=49056 SESEC_RS05660 WP_038674257.1 1190038..1191267(-) (clpX) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
MAGNRSNDIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEILNQYVIGQER
AKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEINAEDIQKFGLIPEFIGRLPVVAALEQLNTEDLIRI
LTEPRNALVKQYQALLSYDGVELEFAKGALEAIAGRAIERKTGARGLRSIIEETMLDIMFEVPSQEEVTKVRITKEAVEG
QSKPVLEIA

Nucleotide

• Length: 1230 bp

>NTDB_id=49056 SESEC_RS05660 WP_038674257.1 1190038..1191267(-) (clpX) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
ATGGCAGGAAATCGTAGTAACGATATTAAGGTTCATTGCTCGTTTTGCGGCAAGAGCCAAGACGAAGTGAAAAAAATTAT
TGCAGGTAATAACGTCTTTATTTGTAACGAATGTGTTGCCTTATCACAAGAAATCATCAAGGAAGAATTGGCAGAAGAGG
TTCTCGCTGATCTGACTGAAGTACCAAAGCCAAAAGAGCTGCTTGAGATTTTAAATCAATACGTCATTGGGCAGGAGCGT
GCTAAGAGAGCCTTATCAGTTGCAGTTTACAACCACTACAAGAGGATTTCATTTACTGAGAGTCGTGACGATGATGATGT
GGATTTGCAAAAGTCAAACATTCTGATGATTGGACCAACAGGCTCAGGAAAGACCTTTTTGGCACAGACCCTAGCTAAGA
GTCTGAATGTTCCGTTTGCTATTGCTGATGCAACCTCTTTGACTGAGGCAGGCTATGTCGGAGAAGATGTGGAAAATATC
CTCCTGAAATTAATTCAAGCAGCTGATTACAATGTTGAGCGTGCAGAGCGCGGCATTATTTATGTTGACGAAATTGATAA
AATCGCTAAAAAAGGTGAGAATGTCTCCATTACTCGTGATGTATCAGGAGAAGGTGTCCAACAAGCCTTGCTAAAAATTA
TTGAGGGAACGGTTGCTAGTGTTCCACCACAGGGTGGTCGTAAGCACCCAAACCAAGAGATGATACAGATTGATACCAAA
AATATCTTGTTTATCGTCGGAGGCGCTTTTGATGGTATCGAAGAAATTGTCAAGCAGCGCTTGGGAGAAAAGATCATTGG
CTTTGGGCAAAATAGTCGAAAGATTGATGACAATGCTTCCTATATGCAGGAGATCAATGCTGAGGATATTCAAAAATTTG
GTCTGATTCCTGAATTTATTGGACGCTTGCCTGTTGTGGCAGCGCTTGAGCAGCTTAATACTGAGGATTTGATTCGTATT
TTAACAGAGCCTAGAAATGCCCTTGTGAAGCAATATCAAGCCTTGCTGTCATATGATGGCGTAGAGCTTGAGTTTGCAAA
GGGAGCTCTGGAAGCTATTGCAGGCAGAGCTATTGAGCGCAAGACTGGTGCGCGTGGTCTGAGGTCTATTATCGAAGAAA
CCATGCTGGATATCATGTTTGAGGTGCCAAGCCAAGAGGAAGTAACCAAGGTACGCATTACTAAGGAAGCTGTCGAGGGT
CAATCAAAGCCCGTTTTAGAGATAGCCTAG

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	88.509	100	0.885
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.853	98.044	0.577