Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   IHV80_RS13345 Genome accession   NZ_CP062500
Coordinates   3034444..3035049 (+) Length   201 a.a.
NCBI ID   WP_048664508.1    Uniprot ID   A0A2N7JXS8
Organism   Vibrio bathopelagicus strain Sal10     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3029444..3040049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS13325 - 3029676..3030593 (-) 918 WP_192889362.1 ABC transporter ATP-binding protein -
  IHV80_RS13330 - 3030905..3032536 (-) 1632 WP_192890773.1 SulP family inorganic anion transporter -
  IHV80_RS13335 can 3032823..3033482 (+) 660 WP_192889363.1 carbonate dehydratase -
  IHV80_RS13340 hpt 3033576..3034106 (-) 531 WP_010435974.1 hypoxanthine phosphoribosyltransferase -
  IHV80_RS13345 opaR 3034444..3035049 (+) 606 WP_048664508.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  IHV80_RS13350 lpdA 3035249..3036679 (-) 1431 WP_192889364.1 dihydrolipoyl dehydrogenase -
  IHV80_RS13355 aceF 3036922..3038808 (-) 1887 WP_192889365.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23209.44 Da        Isoelectric Point: 6.0748

>NTDB_id=490507 IHV80_RS13345 WP_048664508.1 3034444..3035049(+) (opaR) [Vibrio bathopelagicus strain Sal10]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=490507 IHV80_RS13345 WP_048664508.1 3034444..3035049(+) (opaR) [Vibrio bathopelagicus strain Sal10]
ATGGACTCAATCTCTAAGAGACCTAGAACTAGGCTTTCACCCCTAAAAAGAAAACTGCAATTGATGGAGATCGCTCTTGA
AGTCTTCTCTCGTCGTGGCATTGGCCGTGGCGGTCATGCAGACATCGCAGACATTGCTCAAGTATCAGTTGCAACGGTAT
TTAACTACTTCCCAACCCGTGAAGATCTGGTTGATGAAGTACTTAATCACGTGGTTCGCCAATTCTCTAACTTCCTTTCA
GACAATATCGACTTAGATATTCACGCAAAAGAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCAAGA
TAGCCATTGGTTGAACGTATGGTTTGAATGGAGTGCTTCGACTCGCGATGAAGTTTGGCCTCTATTCGTAACCACAAACC
GCACTAACCAAATGTTAGTACAAAACATGTTTAGCAAAGCGATTGAGCGCGGCGAAGTTTGCGACGATCACGATCCTAAG
CATCTAGCAAACCTATTCCACGGCATTTGCTACTCGCTATTCATTCAAGCGAAACGTGTTGAAACGCCTGAAGAGCTTTC
AAGCTTAACGGATAGCTACTTGAACATGCTGTGCATTTATAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7JXS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

83

99.502

0.826
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726