Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   IHV80_RS11130 Genome accession   NZ_CP062500
Coordinates   2538218..2539606 (-) Length   462 a.a.
NCBI ID   WP_017111109.1    Uniprot ID   -
Organism   Vibrio bathopelagicus strain Sal10     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2533218..2544606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS11095 moaE 2533755..2534210 (-) 456 WP_192889090.1 molybdopterin synthase catalytic subunit MoaE -
  IHV80_RS11100 moaD 2534213..2534458 (-) 246 WP_192889091.1 molybdopterin synthase sulfur carrier subunit -
  IHV80_RS11105 moaC 2534455..2534934 (-) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  IHV80_RS11110 moaB 2534946..2535458 (-) 513 WP_004734027.1 molybdenum cofactor biosynthesis protein B -
  IHV80_RS11115 moaA 2535549..2536538 (-) 990 WP_017632500.1 GTP 3',8-cyclase MoaA -
  IHV80_RS11120 - 2536874..2537761 (+) 888 WP_192889092.1 YvcK family protein -
  IHV80_RS11125 luxU 2537850..2538194 (-) 345 WP_065103213.1 quorum-sensing phosphorelay protein LuxU -
  IHV80_RS11130 luxO 2538218..2539606 (-) 1389 WP_017111109.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  IHV80_RS11135 uvrB 2539923..2541953 (-) 2031 WP_017111110.1 excinuclease ABC subunit UvrB -
  IHV80_RS11145 rsxA 2542893..2543471 (+) 579 WP_004734039.1 electron transport complex subunit RsxA -
  IHV80_RS11150 rsxB 2543474..2544067 (+) 594 WP_004734040.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51746.31 Da        Isoelectric Point: 6.4047

>NTDB_id=490505 IHV80_RS11130 WP_017111109.1 2538218..2539606(-) (luxO) [Vibrio bathopelagicus strain Sal10]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSAEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=490505 IHV80_RS11130 WP_017111109.1 2538218..2539606(-) (luxO) [Vibrio bathopelagicus strain Sal10]
ATGCAATCAAAAACGCTAGATAACAAATCGAAGTATTTGTTGATGGTAGAGGATACCGCTTCGGTAGCGGCTCTATATCG
CTCGTATCTTACACCGCTCGAGATTGATATCAACATTGTCGGCACAGGCCGCGATGCAATTGAGAGTTTGAATCACCGAA
TCCCAGACCTTATTTTATTAGATCTACGTCTACCTGATATGACGGGTATGGACGTGCTATTTGCTGTAAAACAAAAATAC
CCAGAAGTTCCAGTTATTTTTATGACGGCTCACGGTTCTATCGATACGGCCGTTGAAGCGATGCGTCATGGTTCTCAAGA
TTTCCTTATCAAACCGTGTGAAGCCGACCGACTTCGTATTACGGTGAACAACGCGATCCGTAAAGCGACAAAACTCAAAA
ACAGCGCTGAACATCCCGGTAATCAAAACTATCAAGGCTTCATTGGTAGCAGCCAAACCATGCAGCAGGTCTACCGAACT
ATCGATTCTGCCGCATCGAGTAAGGCGAGTATCTTCATCACGGGTGAAAGTGGTACCGGTAAAGAGGTGTGTGCAGAAGC
GATTCACGCTGCGAGTAAGCGTGGTGATAAGCCTTTCATCGCGATTAACTGTGCCGCTATTCCTAAAGATTTGATTGAAA
GTGAACTGTTTGGTCACGTTAAGGGTGCCTTTACTGGTGCCGCAACGGATCGTCAAGGAGCTGCTGAACTCGCAGATGGT
GGAACCCTGTTCCTCGATGAGTTGTGCGAAATGGATCTTGAACTGCAAACCAAGCTTCTGCGTTTCATTCAAACCGGTAC
TTTCCAGAAAGTGGGTTCTTCAAAAATGAAGAGCGTTGATGTGCGCTTTGTTTGTGCAACCAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATTCCTCTGCACTTGCCGCCACTACGTGAG
CGAGGGGAAGACGTTATTGAAATTGCGTACTCGCTGCTGGGCTATATGTCTGTTGAGGAAGGTAAAGCCTTTGTGCGTTT
TGCTCAGGAAGTGTTGGATCGCTTTAATCAATATGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTATTACGAAATG
TGGTGGTATTGAATAATGGTAAAGAGATTACTCTGAACATGCTTCCGCCGCCATTGAATCAACCTATTGAAAACAGTCTG
CGACTGAAAGAGAAGCAGAATGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCAATTGA
ACAGGCCATAAAAGCGTGTGATGGCAACATCCCTCGCGCGGCAGGTTTCTTGGATGTCAGTCCATCAACGATATACCGTA
AATTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.393

96.97

0.372