Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   IHV08_RS19825 Genome accession   NZ_CP062497
Coordinates   3823169..3824314 (+) Length   381 a.a.
NCBI ID   WP_015250985.1    Uniprot ID   -
Organism   Bacillus subtilis strain CV16     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3818169..3829314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS19805 (IHV08_19805) albF 3818184..3819464 (+) 1281 WP_029318696.1 pitrilysin family protein -
  IHV08_RS19810 (IHV08_19810) albG 3819461..3820162 (+) 702 WP_029318695.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  IHV08_RS19815 (IHV08_19815) ywhL 3820168..3821544 (-) 1377 WP_181217516.1 YncE family protein -
  IHV08_RS19820 (IHV08_19820) ywhK 3821584..3822939 (-) 1356 WP_046381402.1 YncE family protein -
  IHV08_RS19825 (IHV08_19825) rapF 3823169..3824314 (+) 1146 WP_015250985.1 response regulator aspartate phosphatase RapF Regulator
  IHV08_RS19830 (IHV08_19830) phrF 3824298..3824417 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  IHV08_RS19835 (IHV08_19835) - 3824670..3825149 (+) 480 WP_015714892.1 hypothetical protein -
  IHV08_RS19840 (IHV08_19840) - 3825298..3826086 (+) 789 WP_015714893.1 membrane protein -
  IHV08_RS19845 (IHV08_19845) - 3826073..3826747 (+) 675 WP_015714894.1 hypothetical protein -
  IHV08_RS19850 (IHV08_19850) - 3826757..3827554 (+) 798 WP_231573542.1 hypothetical protein -
  IHV08_RS19855 (IHV08_19855) - 3827557..3828204 (+) 648 WP_192858077.1 ABC transporter ATP-binding protein -
  IHV08_RS19860 (IHV08_19860) - 3828197..3828757 (+) 561 WP_015714897.1 hypothetical protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45590.06 Da        Isoelectric Point: 5.0624

>NTDB_id=490483 IHV08_RS19825 WP_015250985.1 3823169..3824314(+) (rapF) [Bacillus subtilis strain CV16]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=490483 IHV08_RS19825 WP_015250985.1 3823169..3824314(+) (rapF) [Bacillus subtilis strain CV16]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTTAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_12)

(223-290)

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(132-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

99.213

100

0.992
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572