Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   IHV08_RS19830 Genome accession   NZ_CP062497
Coordinates   3824298..3824417 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain CV16     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3819298..3829417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS19810 (IHV08_19810) albG 3819461..3820162 (+) 702 WP_029318695.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  IHV08_RS19815 (IHV08_19815) ywhL 3820168..3821544 (-) 1377 WP_181217516.1 YncE family protein -
  IHV08_RS19820 (IHV08_19820) ywhK 3821584..3822939 (-) 1356 WP_046381402.1 YncE family protein -
  IHV08_RS19825 (IHV08_19825) rapF 3823169..3824314 (+) 1146 WP_015250985.1 response regulator aspartate phosphatase RapF Regulator
  IHV08_RS19830 (IHV08_19830) phrF 3824298..3824417 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  IHV08_RS19835 (IHV08_19835) - 3824670..3825149 (+) 480 WP_015714892.1 hypothetical protein -
  IHV08_RS19840 (IHV08_19840) - 3825298..3826086 (+) 789 WP_015714893.1 membrane protein -
  IHV08_RS19845 (IHV08_19845) - 3826073..3826747 (+) 675 WP_015714894.1 hypothetical protein -
  IHV08_RS19850 (IHV08_19850) - 3826757..3827554 (+) 798 WP_231573542.1 hypothetical protein -
  IHV08_RS19855 (IHV08_19855) - 3827557..3828204 (+) 648 WP_192858077.1 ABC transporter ATP-binding protein -
  IHV08_RS19860 (IHV08_19860) - 3828197..3828757 (+) 561 WP_015714897.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=490484 IHV08_RS19830 WP_009968329.1 3824298..3824417(+) (phrF) [Bacillus subtilis strain CV16]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=490484 IHV08_RS19830 WP_009968329.1 3824298..3824417(+) (phrF) [Bacillus subtilis strain CV16]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487