Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   MSA_RS01680 Genome accession   NC_021486
Coordinates   279938..280672 (+) Length   244 a.a.
NCBI ID   WP_000589158.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 274938..285672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS01665 (MSA_3430) - 275860..277290 (+) 1431 WP_016480285.1 helix-turn-helix domain-containing protein -
  MSA_RS01670 (MSA_3440) recP/tkt 277415..279400 (+) 1986 WP_000141859.1 transketolase Machinery gene
  MSA_RS01675 (MSA_3450) - 279613..279918 (+) 306 WP_000711207.1 bacteriocin immunity protein -
  MSA_RS01680 (MSA_3460) pptA 279938..280672 (+) 735 WP_000589158.1 ABC transporter ATP-binding protein Regulator
  MSA_RS01685 (MSA_3470) - 280676..282280 (+) 1605 WP_016480286.1 ABC transporter permease -
  MSA_RS01690 (MSA_3480) - 282488..283873 (-) 1386 WP_016480287.1 PTS transporter subunit EIIC -
  MSA_RS01695 (MSA_3490) proB 284014..284817 (+) 804 WP_000820352.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27546.69 Da        Isoelectric Point: 4.6741

>NTDB_id=49048 MSA_RS01680 WP_000589158.1 279938..280672(+) (pptA) [Streptococcus agalactiae ILRI005]
MIKFEHVSKVYGEKEALSDLTLSIKDGEIFGLIGHNGAGKTTTISILTSIIDATYGQVYIDDLLLTEHRDQIKKKIGYVP
DSPDIFLNLTAEEYWYFLAKIYDVAPEDIEARITKLVDIFELEEQRYNPIESFSHGMRQKVIVIGALLPNPDIWILDEPL
TGLDPQASFDLKEMMKEHAKNGKTVIFSTHVLAVAEQLCDRIGILKQGKLIFVGSLGELKMQYPDKDLETIYLELAGRQA
NREG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=49048 MSA_RS01680 WP_000589158.1 279938..280672(+) (pptA) [Streptococcus agalactiae ILRI005]
ATGATTAAGTTTGAACATGTTTCGAAAGTATACGGGGAAAAAGAAGCTCTCAGTGATTTAACCCTCTCTATTAAAGATGG
TGAGATTTTTGGATTAATCGGTCACAATGGAGCAGGAAAAACAACGACAATTAGTATTCTAACATCTATTATTGATGCAA
CTTATGGCCAAGTCTATATTGATGACCTACTTTTGACAGAACATCGTGACCAAATTAAGAAAAAAATAGGTTATGTACCG
GACTCGCCAGATATTTTCTTAAATTTAACCGCAGAGGAATATTGGTACTTTTTAGCTAAAATTTATGATGTTGCCCCAGA
AGATATTGAAGCACGTATCACAAAATTGGTAGACATATTTGAACTAGAGGAGCAACGCTATAATCCTATTGAAAGTTTTT
CACATGGTATGCGTCAAAAAGTCATTGTTATAGGTGCTCTTCTTCCAAATCCTGATATTTGGATTCTAGATGAGCCGTTA
ACTGGTTTAGACCCTCAAGCTTCTTTTGATTTGAAAGAAATGATGAAAGAACATGCTAAAAATGGAAAAACAGTTATTTT
TTCAACACATGTTTTAGCAGTAGCAGAACAGTTATGCGACAGAATAGGTATTTTGAAACAAGGGAAATTAATCTTTGTCG
GTAGCTTAGGTGAGTTAAAAATGCAATATCCAGATAAAGATTTGGAAACTATCTATTTGGAATTAGCAGGACGTCAAGCT
AATAGGGAGGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

38.655

97.541

0.377
  pptA Streptococcus salivarius strain HSISS4

38.235

97.541

0.373

Multiple sequence alignment