Detailed information NTG0490429

Bioinformatically predicted

Overview

• Name: med
• Type: Regulator
• Locus tag: IHV08_RS06275
• Genome accession: NZ_CP062497
• Coordinates: 1199950..1200903 (+)
• Length: 317 a.a.
• NCBI ID: WP_014476425.1
• Uniprot ID: A0A0K6M9I2
• Organism: Bacillus subtilis strain CV16
• Function: regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 1194950..1205903

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHV08_RS06250 (IHV08_06250)	argF	1196780..1197739 (+)	960	WP_192858357.1	ornithine carbamoyltransferase	-
IHV08_RS06255 (IHV08_06255)	yjzC	1197825..1198004 (+)	180	WP_003245356.1	YjzC family protein	-
IHV08_RS06260 (IHV08_06260)	yjzD	1198051..1198236 (-)	186	WP_003245236.1	DUF2929 domain-containing protein	-
IHV08_RS06265 (IHV08_06265)	-	1198486..1199220 (+)	735	WP_003245223.1	hypothetical protein	-
IHV08_RS06270 (IHV08_06270)	-	1199302..1199859 (+)	558	WP_014479435.1	hypothetical protein	-
IHV08_RS06275 (IHV08_06275)	med	1199950..1200903 (+)	954	WP_014476425.1	transcriptional regulator Med	Regulator
IHV08_RS06280 (IHV08_06280)	comZ	1200918..1201109 (+)	192	WP_003224559.1	ComG operon transcriptional repressor ComZ	Regulator
IHV08_RS06285 (IHV08_06285)	yjzB	1201139..1201378 (-)	240	WP_003232972.1	spore coat protein YjzB	-
IHV08_RS06290 (IHV08_06290)	fabH	1201543..1202481 (+)	939	WP_003232971.1	beta-ketoacyl-ACP synthase III	-
IHV08_RS06295 (IHV08_06295)	fabF	1202504..1203745 (+)	1242	WP_003244890.1	beta-ketoacyl-ACP synthase II	-
IHV08_RS06300 (IHV08_06300)	yjaZ	1203821..1204606 (+)	786	WP_032721346.1	DUF2268 domain-containing protein	-
IHV08_RS06305 (IHV08_06305)	appD	1204798..1205784 (+)	987	WP_003232965.1	oligopeptide ABC transporter ATP-binding protein AppD	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 35310.84 Da
• Isoelectric Point: 4.6031

>NTDB_id=490429 IHV08_RS06275 WP_014476425.1 1199950..1200903(+) (med) [Bacillus subtilis strain CV16]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide

• Length: 954 bp

>NTDB_id=490429 IHV08_RS06275 WP_014476425.1 1199950..1200903(+) (med) [Bacillus subtilis strain CV16]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGTCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCCTCCTTTACGTGGCAG
CCTGAGGTGGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

• ABC transporter substrate-binding protein PnrA-like (Bmp) (27-317)

3D structure

• AlphaFold DB: A0A0K6M9I2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
med	Bacillus subtilis subsp. subtilis str. 168	99.685	100	0.997