Detailed information NTG0490430

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KFU78_RS04950
• Genome accession: NZ_CP074047
• Coordinates: 1023944..1024936 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain PD7
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1018944..1029936

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFU78_RS04920 (KFU78_04870)	ispD	1019005..1019715 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KFU78_RS04925 (KFU78_04875)	ispF	1019715..1020194 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KFU78_RS04930 (KFU78_04880)	truD	1020191..1021240 (+)	1050	WP_222898799.1	tRNA pseudouridine(13) synthase TruD	-
KFU78_RS04935 (KFU78_04885)	surE	1021221..1021982 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KFU78_RS04940 (KFU78_04890)	pcm	1021976..1022602 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KFU78_RS04945 (KFU78_04895)	nlpD	1022787..1023881 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KFU78_RS04950 (KFU78_04900)	rpoS	1023944..1024936 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KFU78_RS04955 (KFU78_04905)	ygbN	1025030..1026394 (-)	1365	WP_222898800.1	GntP family transporter	-
KFU78_RS04960 (KFU78_04910)	ygbM	1026483..1027259 (-)	777	WP_222898801.1	HPr family phosphocarrier protein	-
KFU78_RS04965 (KFU78_04915)	ygbL	1027264..1027902 (-)	639	WP_001278994.1	aldolase	-
KFU78_RS04970 (KFU78_04920)	otnK	1027899..1029161 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=490430 KFU78_RS04950 WP_000081550.1 1023944..1024936(+) (rpoS) [Escherichia coli strain PD7]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=490430 KFU78_RS04950 WP_000081550.1 1023944..1024936(+) (rpoS) [Escherichia coli strain PD7]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715