Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ILQ00_RS04840 Genome accession   NZ_CP062473
Coordinates   1036141..1036704 (-) Length   187 a.a.
NCBI ID   WP_057909426.1    Uniprot ID   A0A0R1YYP4
Organism   Lentilactobacillus parabuchneri strain KEM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1031141..1041704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ILQ00_RS04825 (ILQ00_04825) - 1032314..1033705 (-) 1392 WP_057909423.1 amino acid permease -
  ILQ00_RS04830 (ILQ00_04830) nhaC 1034348..1035763 (+) 1416 WP_057909424.1 Na+/H+ antiporter NhaC -
  ILQ00_RS04835 (ILQ00_04835) rpsR 1035864..1036103 (-) 240 WP_057909425.1 30S ribosomal protein S18 -
  ILQ00_RS04840 (ILQ00_04840) ssb 1036141..1036704 (-) 564 WP_057909426.1 single-stranded DNA-binding protein Machinery gene
  ILQ00_RS04845 (ILQ00_04845) rpsF 1036739..1037035 (-) 297 WP_057909427.1 30S ribosomal protein S6 -
  ILQ00_RS04850 (ILQ00_04850) - 1037450..1037626 (+) 177 WP_167547564.1 hypothetical protein -
  ILQ00_RS04855 (ILQ00_04855) - 1037824..1038933 (-) 1110 WP_192851786.1 lactate oxidase -
  ILQ00_RS04860 (ILQ00_04860) - 1039130..1039477 (+) 348 WP_057909429.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20254.60 Da        Isoelectric Point: 4.5657

>NTDB_id=490362 ILQ00_RS04840 WP_057909426.1 1036141..1036704(-) (ssb) [Lentilactobacillus parabuchneri strain KEM]
MLNRAVLTGRLTRDVDLRYTQSGTAVGSFSLAVDRQFTNQQGEREADFINCVIWRKSAENFANFVHKGSLVGIDGRIQTR
NYENAQGQRIYVTEVVVENFALLEPRSVRNNSNGQQNGNAPQQNNGNANPFDNNSNSGNGGNVNTGSSNPTNNNNGGNNG
NNGNNTPNDPFANSGDSIDISDDDLPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=490362 ILQ00_RS04840 WP_057909426.1 1036141..1036704(-) (ssb) [Lentilactobacillus parabuchneri strain KEM]
ATGCTTAATCGTGCAGTTCTTACGGGTCGCCTAACCCGCGATGTTGATTTACGATACACTCAAAGCGGAACCGCTGTTGG
TTCGTTCTCGCTCGCCGTTGATCGGCAATTTACCAATCAACAGGGGGAACGTGAGGCTGATTTCATTAACTGCGTAATCT
GGCGTAAATCCGCTGAAAACTTTGCTAACTTCGTTCATAAGGGTTCTCTTGTTGGAATTGATGGTCGGATTCAGACCAGA
AATTATGAAAACGCACAGGGACAACGTATTTATGTGACGGAAGTCGTAGTAGAGAATTTTGCGTTGCTTGAGCCTCGTTC
TGTAAGGAACAACTCAAACGGTCAGCAAAATGGCAATGCTCCTCAACAAAACAATGGGAATGCCAATCCATTTGATAATA
ATTCAAACTCTGGTAATGGCGGCAACGTGAATACTGGTAGTAGCAATCCTACTAACAATAATAACGGTGGCAATAACGGC
AACAATGGGAATAATACCCCTAATGATCCGTTTGCCAACTCCGGAGATTCGATTGACATTTCCGATGACGATTTACCATT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1YYP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.567

100

0.626
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.476

100

0.535