Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ILP76_RS07220 Genome accession   NZ_CP062469
Coordinates   1437696..1438142 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MRSA - AMRF 4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1432696..1443142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ILP76_RS07185 (ILP76_07185) - 1433190..1433393 (+) 204 WP_000087561.1 YqgQ family protein -
  ILP76_RS07190 (ILP76_07190) - 1433390..1434376 (+) 987 WP_000161315.1 ROK family glucokinase -
  ILP76_RS07195 (ILP76_07195) - 1434376..1434705 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ILP76_RS07200 (ILP76_07200) - 1434702..1435325 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ILP76_RS07205 (ILP76_07205) comGA 1435377..1436351 (+) 975 WP_000697219.1 competence type IV pilus ATPase ComGA Machinery gene
  ILP76_RS07210 (ILP76_07210) comGB 1436323..1437393 (+) 1071 WP_194085686.1 competence type IV pilus assembly protein ComGB Machinery gene
  ILP76_RS07215 (ILP76_07215) comGC 1437407..1437718 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ILP76_RS07220 (ILP76_07220) comGD 1437696..1438142 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  ILP76_RS07225 (ILP76_07225) comGE 1438129..1438428 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  ILP76_RS07230 (ILP76_07230) comGF 1438346..1438843 (+) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  ILP76_RS07235 (ILP76_07235) - 1438940..1439086 (+) 147 WP_001789879.1 hypothetical protein -
  ILP76_RS07240 (ILP76_07240) - 1439076..1439600 (+) 525 WP_001015121.1 shikimate kinase -
  ILP76_RS07245 (ILP76_07245) gcvT 1439759..1440850 (+) 1092 WP_000093345.1 glycine cleavage system aminomethyltransferase GcvT -
  ILP76_RS07250 (ILP76_07250) gcvPA 1440870..1442216 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=490293 ILP76_RS07220 WP_001788899.1 1437696..1438142(+) (comGD) [Staphylococcus aureus strain MRSA - AMRF 4]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=490293 ILP76_RS07220 WP_001788899.1 1437696..1438142(+) (comGD) [Staphylococcus aureus strain MRSA - AMRF 4]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1