Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ILP76_RS06980 Genome accession   NZ_CP062469
Coordinates   1390787..1391473 (+) Length   228 a.a.
NCBI ID   WP_072353822.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MRSA - AMRF 4     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1385787..1396473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ILP76_RS06945 (ILP76_06945) yqeH 1386314..1387414 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  ILP76_RS06950 (ILP76_06950) aroE 1387428..1388234 (+) 807 WP_000666748.1 shikimate dehydrogenase -
  ILP76_RS06955 (ILP76_06955) yhbY 1388238..1388528 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  ILP76_RS06960 (ILP76_06960) nadD 1388531..1389100 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ILP76_RS06965 (ILP76_06965) yqeK 1389090..1389674 (+) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ILP76_RS06970 (ILP76_06970) rsfS 1389675..1390028 (+) 354 WP_001088020.1 ribosome silencing factor -
  ILP76_RS06975 (ILP76_06975) - 1390031..1390747 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ILP76_RS06980 (ILP76_06980) comEA 1390787..1391473 (+) 687 WP_072353822.1 ComEA family DNA-binding protein Machinery gene
  ILP76_RS06985 (ILP76_06985) - 1391565..1392026 (+) 462 WP_000439693.1 ComE operon protein 2 -
  ILP76_RS06990 (ILP76_06990) comEC 1392031..1394232 (+) 2202 WP_025175028.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ILP76_RS06995 (ILP76_06995) holA 1394289..1395263 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ILP76_RS07000 (ILP76_07000) rpsT 1395308..1395559 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=490287 ILP76_RS06980 WP_072353822.1 1390787..1391473(+) (comEA) [Staphylococcus aureus strain MRSA - AMRF 4]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=490287 ILP76_RS06980 WP_072353822.1 1390787..1391473(+) (comEA) [Staphylococcus aureus strain MRSA - AMRF 4]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

97.807

100

0.978