Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ILP77_RS01900 Genome accession   NZ_CP062467
Coordinates   359107..359676 (-) Length   189 a.a.
NCBI ID   WP_000872864.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MRSA - AMRF 5     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 354107..364676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ILP77_RS01860 (ILP77_01860) - 354581..355189 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  ILP77_RS01865 (ILP77_01865) rplL 355364..355732 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ILP77_RS01870 (ILP77_01870) rplJ 355775..356275 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  ILP77_RS01875 (ILP77_01875) rplA 356547..357239 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ILP77_RS01880 (ILP77_01880) rplK 357447..357869 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ILP77_RS01885 (ILP77_01885) nusG 358050..358598 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ILP77_RS01890 (ILP77_01890) secE 358611..358793 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ILP77_RS01895 (ILP77_01895) rpmG 358849..358992 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ILP77_RS01900 (ILP77_01900) sigH 359107..359676 (-) 570 WP_000872864.1 sigma-70 family RNA polymerase sigma factor Regulator
  ILP77_RS01905 (ILP77_01905) - 359757..360281 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ILP77_RS01910 (ILP77_01910) rlmB 360281..361027 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ILP77_RS01915 (ILP77_01915) - 361035..361439 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ILP77_RS01920 (ILP77_01920) cysS 361432..362832 (-) 1401 WP_000631974.1 cysteine--tRNA ligase -
  ILP77_RS01925 (ILP77_01925) cysE 362816..363463 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=490226 ILP77_RS01900 WP_000872864.1 359107..359676(-) (sigH) [Staphylococcus aureus strain MRSA - AMRF 5]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLKPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNQLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=490226 ILP77_RS01900 WP_000872864.1 359107..359676(-) (sigH) [Staphylococcus aureus strain MRSA - AMRF 5]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTAAAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATCAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974