Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ILP78_RS10180 Genome accession   NZ_CP062465
Coordinates   2039716..2040702 (-) Length   328 a.a.
NCBI ID   WP_000959284.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MRSA - AMRF 6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2034716..2045702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ILP78_RS10155 (ILP78_10155) - 2034975..2035322 (-) 348 WP_001242102.1 hypothetical protein -
  ILP78_RS10160 (ILP78_10160) - 2035508..2036101 (+) 594 WP_000224622.1 CYTH domain-containing protein -
  ILP78_RS10165 (ILP78_10165) - 2036205..2036570 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  ILP78_RS10170 (ILP78_10170) yjbH 2036593..2037399 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  ILP78_RS10175 (ILP78_10175) pepF 2037860..2039668 (-) 1809 WP_000082728.1 oligoendopeptidase F -
  ILP78_RS10180 (ILP78_10180) coiA 2039716..2040702 (-) 987 WP_000959284.1 competence protein CoiA Machinery gene
  ILP78_RS10185 (ILP78_10185) mecA 2040823..2041542 (-) 720 WP_001217728.1 adaptor protein MecA -
  ILP78_RS10190 (ILP78_10190) spxA 2041913..2042308 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  ILP78_RS10195 (ILP78_10195) trpS 2042603..2043592 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  ILP78_RS10200 (ILP78_10200) opp4C 2043634..2044515 (-) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  ILP78_RS10205 (ILP78_10205) opp4B 2044527..2045489 (-) 963 WP_000239818.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38810.39 Da        Isoelectric Point: 9.5881

>NTDB_id=490214 ILP78_RS10180 WP_000959284.1 2039716..2040702(-) (coiA) [Staphylococcus aureus strain MRSA - AMRF 6]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=490214 ILP78_RS10180 WP_000959284.1 2039716..2040702(-) (coiA) [Staphylococcus aureus strain MRSA - AMRF 6]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTATTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982