Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   IF715_RS07215 Genome accession   NZ_CP062418
Coordinates   1444171..1444740 (-) Length   189 a.a.
NCBI ID   WP_000872874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_136     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1439171..1449740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF715_RS07175 (IF715_07145) - 1439645..1440253 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  IF715_RS07180 (IF715_07150) rplL 1440428..1440796 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  IF715_RS07185 (IF715_07155) rplJ 1440839..1441339 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  IF715_RS07190 (IF715_07160) rplA 1441611..1442303 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  IF715_RS07195 (IF715_07165) rplK 1442511..1442933 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  IF715_RS07200 (IF715_07170) nusG 1443114..1443662 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  IF715_RS07205 (IF715_07175) secE 1443675..1443857 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  IF715_RS07210 (IF715_07180) rpmG 1443913..1444056 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  IF715_RS07215 (IF715_07185) sigH 1444171..1444740 (-) 570 WP_000872874.1 RNA polymerase sigma factor Regulator
  IF715_RS07220 (IF715_07190) - 1444821..1445345 (-) 525 WP_000664738.1 NYN domain-containing protein -
  IF715_RS07225 (IF715_07195) rlmB 1445345..1446091 (-) 747 WP_000390336.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IF715_RS07230 (IF715_07200) - 1446099..1446503 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  IF715_RS07235 (IF715_07205) cysS 1446496..1447896 (-) 1401 WP_000631974.1 cysteine--tRNA ligase -
  IF715_RS07240 (IF715_07210) cysE 1447880..1448527 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=490003 IF715_RS07215 WP_000872874.1 1444171..1444740(-) (sigH) [Staphylococcus aureus strain NAS_AN_136]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=490003 IF715_RS07215 WP_000872874.1 1444171..1444740(-) (sigH) [Staphylococcus aureus strain NAS_AN_136]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.413

100

0.984
  sigH Staphylococcus aureus MW2

98.413

100

0.984