Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   KFU81_RS21880 Genome accession   NZ_CP074012
Coordinates   4473785..4475194 (+) Length   469 a.a.
NCBI ID   WP_001188776.1    Uniprot ID   Q3YVA5
Organism   Escherichia coli strain PI24     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4468785..4480194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU81_RS21865 (KFU81_21735) typA 4468833..4470656 (-) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -
  KFU81_RS21870 (KFU81_21740) glnA 4471029..4472438 (+) 1410 WP_001271717.1 glutamate--ammonia ligase -
  KFU81_RS21875 (KFU81_21745) glnL 4472724..4473773 (+) 1050 WP_000190577.1 nitrogen regulation protein NR(II) -
  KFU81_RS21880 (KFU81_21750) luxO 4473785..4475194 (+) 1410 WP_001188776.1 nitrogen regulation protein NR(I) Regulator
  KFU81_RS21885 (KFU81_21755) yshB 4475306..4475416 (+) 111 WP_000893994.1 YshB family small membrane protein -
  KFU81_RS21890 (KFU81_21760) hemN 4475645..4477018 (-) 1374 WP_000116090.1 oxygen-independent coproporphyrinogen III oxidase -
  KFU81_RS21895 (KFU81_21765) yihI 4477207..4477713 (-) 507 WP_001300530.1 Der GTPase-activating protein YihI -
  KFU81_RS21900 - 4477832..4477998 (-) 167 Protein_4311 hypothetical protein -
  KFU81_RS21905 (KFU81_21770) yihA 4478296..4478928 (+) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52268.77 Da        Isoelectric Point: 6.4561

>NTDB_id=489924 KFU81_RS21880 WP_001188776.1 4473785..4475194(+) (luxO) [Escherichia coli strain PI24]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNIQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=489924 KFU81_RS21880 WP_001188776.1 4473785..4475194(+) (luxO) [Escherichia coli strain PI24]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAAGTACTGGAGGCGCTGGCGAGCAAAACGCCGGATGTGCTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCAATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCGTTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCAGTGGCGCTGGTTGAGCGCGCTATCAGTCATTACCAGGAACAGCAGCAGCCGCGTAATATTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGGCTTTCGCGTTCT
TCTATTAGCGTGCTGATTAACGGCGAATCCGGCACCGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGTCCGCG
CGCCAAAGCGCCGTTTATCGCGCTGAATATGGCAGCTATCCCAAAAGATTTGATCGAATCAGAACTGTTTGGCCACGAGA
AAGGCGCGTTTACTGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAGGCCGATGGCGGTACATTATTCCTCGACGAA
ATTGGTGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGACGGTCAGTTTTACCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTGGATGTGCGGATTATCGCTGCCACTCACCAGAATCTCGAACAGCGAGTGCAGGAAGGTAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTTATCCGCGTTCATCTGCCGCCGCTGCGCGAACGTCGGGAAGATATTCCCCGT
CTGGCGCGCCATTTTTTACAGGTTGCCGCGCGCGAACTGGGCGTAGAAGCGAAGTTGCTGCATCCGGAAACCGAAGCTGC
TCTGACGCGTCTGGCGTGGCCAGGCAACGTACGCCAGCTGGAAAACACCTGCCGCTGGCTAACGGTGATGGCCGCCGGGC
AGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGCAAATGCAACCGGAC
AGTTGGGCGACACTTTTAGCGCAGTGGGCAGACAGAGCGCTGCGTTCCGGTCATCAAAATCTGCTTTCCGAAGCGCAGCC
AGAGCTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTCGGCT
GGGGCCGCAACACCCTGACGCGTAAGTTAAAAGAGCTGGGGATGGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3YVA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.871

98.934

0.394
  pilR Pseudomonas aeruginosa PAK

39.066

100

0.392