Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IF725_RS12980 Genome accession   NZ_CP062412
Coordinates   2642293..2642688 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_181     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2637293..2647688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF725_RS12950 (IF725_12890) - 2638554..2638958 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  IF725_RS12955 (IF725_12895) - 2639294..2639386 (+) 93 WP_031824610.1 hypothetical protein -
  IF725_RS12960 (IF725_12900) - 2639518..2639751 (+) 234 WP_000384523.1 DUF1146 family protein -
  IF725_RS12965 (IF725_12905) murA 2639862..2641127 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IF725_RS12970 (IF725_12910) fabZ 2641161..2641601 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IF725_RS12975 (IF725_12915) - 2641659..2642099 (-) 441 WP_000846746.1 YwpF-like family protein -
  IF725_RS12980 (IF725_12920) ssb 2642293..2642688 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  IF725_RS12985 (IF725_12925) sceD 2643077..2643772 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  IF725_RS12990 (IF725_12930) tenA 2644159..2644848 (+) 690 WP_000396064.1 thiaminase II -
  IF725_RS12995 (IF725_12935) thiD 2644841..2645671 (+) 831 WP_000594951.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IF725_RS13000 (IF725_12940) thiM 2645655..2646446 (+) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  IF725_RS13005 (IF725_12945) thiE 2646448..2647089 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=489761 IF725_RS12980 WP_000932694.1 2642293..2642688(+) (ssb) [Staphylococcus aureus strain NAS_AN_181]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=489761 IF725_RS12980 WP_000932694.1 2642293..2642688(+) (ssb) [Staphylococcus aureus strain NAS_AN_181]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992