Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   IF725_RS05265 Genome accession   NZ_CP062412
Coordinates   1061885..1062871 (-) Length   328 a.a.
NCBI ID   WP_000959289.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_181     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1056885..1067871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF725_RS05240 (IF725_05225) - 1057145..1057492 (-) 348 WP_001242102.1 hypothetical protein -
  IF725_RS05245 (IF725_05230) - 1057678..1058271 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  IF725_RS05250 (IF725_05235) - 1058375..1058740 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  IF725_RS05255 (IF725_05240) yjbH 1058763..1059569 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  IF725_RS05260 (IF725_05245) pepF 1060029..1061837 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  IF725_RS05265 (IF725_05250) coiA 1061885..1062871 (-) 987 WP_000959289.1 competence protein CoiA family protein Machinery gene
  IF725_RS05270 (IF725_05255) mecA 1062992..1063711 (-) 720 WP_001217728.1 adaptor protein MecA -
  IF725_RS05275 (IF725_05260) spxA 1064082..1064477 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  IF725_RS05280 (IF725_05265) trpS 1064772..1065761 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  IF725_RS05285 (IF725_05270) opp4C 1065803..1066684 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  IF725_RS05290 (IF725_05275) opp4B 1066696..1067658 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38776.37 Da        Isoelectric Point: 9.5881

>NTDB_id=489746 IF725_RS05265 WP_000959289.1 1061885..1062871(-) (coiA) [Staphylococcus aureus strain NAS_AN_181]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAIYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=489746 IF725_RS05265 WP_000959289.1 1061885..1062871(-) (coiA) [Staphylococcus aureus strain NAS_AN_181]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATATATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

97.866

100

0.979