Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IF734_RS12935 Genome accession   NZ_CP062409
Coordinates   2630813..2631208 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_239     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2625813..2636208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF734_RS12905 (IF734_12835) - 2627071..2627475 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  IF734_RS12910 (IF734_12840) - 2627813..2627905 (+) 93 WP_001790611.1 hypothetical protein -
  IF734_RS12915 (IF734_12845) - 2628037..2628270 (+) 234 WP_000384523.1 DUF1146 family protein -
  IF734_RS12920 (IF734_12850) murA 2628381..2629646 (+) 1266 WP_049311907.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IF734_RS12925 (IF734_12855) fabZ 2629680..2630120 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IF734_RS12930 (IF734_12860) - 2630179..2630619 (-) 441 WP_000846746.1 YwpF-like family protein -
  IF734_RS12935 (IF734_12865) ssb 2630813..2631208 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  IF734_RS12940 (IF734_12870) sceD 2631597..2632292 (+) 696 WP_000752005.1 lytic transglycosylase SceD -
  IF734_RS12945 (IF734_12875) tenA 2632679..2633368 (+) 690 WP_000396077.1 thiaminase II -
  IF734_RS12950 (IF734_12880) thiD 2633361..2634191 (+) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IF734_RS12955 (IF734_12885) thiM 2634175..2634966 (+) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  IF734_RS12960 (IF734_12890) thiE 2634968..2635609 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=489633 IF734_RS12935 WP_000932694.1 2630813..2631208(+) (ssb) [Staphylococcus aureus strain NAS_AN_239]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=489633 IF734_RS12935 WP_000932694.1 2630813..2631208(+) (ssb) [Staphylococcus aureus strain NAS_AN_239]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992