Detailed information NTG0048961

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SBAL117_RS20670
• Genome accession: NC_017579
• Coordinates: 4716547..4717461 (+)
• Length: 304 a.a.
• NCBI ID: WP_011848007.1
• Uniprot ID: A3D9H8
• Organism: Shewanella baltica OS117
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4711547..4722461

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SBAL117_RS20655 (Sbal117_4077)	-	4712878..4713309 (+)	432	WP_011848004.1	pilin	-
SBAL117_RS20660 (Sbal117_4078)	pilB	4713399..4715111 (+)	1713	WP_011848005.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SBAL117_RS20665 (Sbal117_4079)	pilC	4715245..4716513 (+)	1269	WP_011848006.1	type II secretion system F family protein	Machinery gene
SBAL117_RS20670 (Sbal117_4080)	pilD	4716547..4717461 (+)	915	WP_011848007.1	prepilin peptidase	Machinery gene
SBAL117_RS20675 (Sbal117_4081)	coaE	4717501..4718118 (+)	618	WP_011848008.1	dephospho-CoA kinase	-
SBAL117_RS20680 (Sbal117_4082)	zapD	4718111..4718845 (+)	735	WP_011848009.1	cell division protein ZapD	-
SBAL117_RS20685 (Sbal117_4083)	yacG	4718919..4719128 (+)	210	WP_011848010.1	DNA gyrase inhibitor YacG	-
SBAL117_RS20690 (Sbal117_4084)	mutT	4719205..4719597 (+)	393	WP_011848011.1	8-oxo-dGTP diphosphatase MutT	-
SBAL117_RS20695 (Sbal117_4085)	-	4719828..4720364 (+)	537	WP_006084374.1	thioredoxin family protein	-
SBAL117_RS20700 (Sbal117_4086)	-	4720428..4721354 (-)	927	WP_011848012.1	exopolyphosphatase	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 33959.40 Da
• Isoelectric Point: 7.7056

>NTDB_id=48961 SBAL117_RS20670 WP_011848007.1 4716547..4717461(+) (pilD) [Shewanella baltica OS117]
MSEFISLLGQHPYLFIALSFIFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHEDIVNKIGINQLNKPIDAFPEKY
NLVVPGSACPKCKTSIKPWHNFPLLGWLMLKGKCAACQAAISARYPIIEFITGLLIATLAWHFGPSWQFVFASILTFVLV
ALTAIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIMGAAAGYLSLWSIFWLFKILTGKEGMGYGDFKLLAVFGAW
LGWQMLPLVILLSSLVGAVVGITMIVSKRLKQGNPIPFGPYIAAAGWIALLFGQQIVDWYLSTL

Nucleotide

• Length: 915 bp

>NTDB_id=48961 SBAL117_RS20670 WP_011848007.1 4716547..4717461(+) (pilD) [Shewanella baltica OS117]
ATGTCAGAATTCATCTCCCTTTTGGGCCAGCACCCTTATCTCTTTATTGCTCTAAGCTTTATTTTTGCCGCTACCATTGG
TAGTTTTTTAAACGTGGTAATCCACAGATTTCCTGTGATGATGAAACGTGAGTGGCAGCAAGAATGTAATCAGTATTTGC
AGGAATACCACGAAGATATAGTCAACAAGATAGGTATAAACCAACTCAATAAACCTATTGATGCCTTCCCAGAGAAGTAT
AATCTGGTTGTGCCGGGCTCAGCCTGCCCTAAATGTAAAACGTCGATTAAGCCTTGGCATAATTTCCCCCTATTAGGCTG
GCTAATGCTCAAGGGAAAATGCGCCGCCTGTCAAGCAGCGATTTCAGCCCGCTACCCTATTATTGAATTCATCACAGGGC
TACTTATCGCGACTTTAGCTTGGCATTTTGGTCCAAGCTGGCAGTTTGTTTTTGCGAGCATACTCACCTTTGTGCTTGTA
GCACTGACAGCTATCGATCTTGATGAGATGCTGCTCCCCGACCAGATGACGTTGCCGTTACTTTGGCTAGGCTTGATAAT
CAACCTAAATCATACCTTTGCGAGTCCAACCGACGCCATTATGGGTGCGGCAGCAGGCTATTTAAGCTTGTGGTCTATTT
TTTGGCTATTTAAGATCCTCACCGGCAAGGAAGGCATGGGTTATGGTGACTTTAAACTGCTAGCCGTGTTCGGTGCTTGG
CTTGGCTGGCAAATGCTGCCGCTGGTGATTTTACTTTCGTCCCTCGTTGGCGCAGTCGTTGGCATCACTATGATTGTTAG
TAAACGCCTGAAACAAGGGAATCCAATCCCATTTGGCCCCTATATTGCCGCAGCTGGCTGGATAGCCTTGCTATTTGGGC
AACAGATTGTCGATTGGTACCTATCGACACTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (154-262)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-143)

3D structure

• AlphaFold DB: A3D9H8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.676	97.368	0.493
pilD	Vibrio campbellii strain DS40M4	48.814	97.039	0.474
pilD	Acinetobacter nosocomialis M2	49.481	95.066	0.47
pilD	Acinetobacter baumannii D1279779	48.789	95.066	0.464
pilD	Neisseria gonorrhoeae MS11	44.33	95.724	0.424