Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IF751_RS10560 Genome accession   NZ_CP062407
Coordinates   2197889..2198284 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_NP_181     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2192889..2203284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF751_RS10530 (IF751_10435) - 2194115..2194519 (+) 405 WP_020977449.1 F0F1 ATP synthase subunit epsilon -
  IF751_RS10535 (IF751_10440) - 2194906..2194983 (+) 78 Protein_2072 hypothetical protein -
  IF751_RS10540 (IF751_10445) - 2195115..2195348 (+) 234 WP_000384520.1 DUF1146 family protein -
  IF751_RS10545 (IF751_10450) murA 2195459..2196724 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IF751_RS10550 (IF751_10455) fabZ 2196758..2197198 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IF751_RS10555 (IF751_10460) - 2197255..2197695 (-) 441 WP_000846746.1 YwpF-like family protein -
  IF751_RS10560 (IF751_10465) ssb 2197889..2198284 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  IF751_RS10565 (IF751_10470) sceD 2198673..2199368 (+) 696 WP_000751996.1 lytic transglycosylase SceD -
  IF751_RS10570 (IF751_10475) tenA 2199755..2200444 (+) 690 WP_000396067.1 thiaminase II -
  IF751_RS10575 (IF751_10480) thiD 2200437..2201267 (+) 831 WP_000594962.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IF751_RS10580 (IF751_10485) thiM 2201251..2202042 (+) 792 WP_020977448.1 hydroxyethylthiazole kinase -
  IF751_RS10585 (IF751_10490) thiE 2202044..2202685 (+) 642 WP_000483165.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=489528 IF751_RS10560 WP_000932694.1 2197889..2198284(+) (ssb) [Staphylococcus aureus strain NAS_NP_181]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=489528 IF751_RS10560 WP_000932694.1 2197889..2198284(+) (ssb) [Staphylococcus aureus strain NAS_NP_181]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992