Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SGGB_RS09670 Genome accession   NC_017576
Coordinates   1946423..1946938 (-) Length   171 a.a.
NCBI ID   WP_009854899.1    Uniprot ID   A0AA36JZF9
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1941423..1951938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS09640 (SGGB_1889) - 1942644..1943588 (+) 945 WP_003066347.1 magnesium transporter CorA family protein -
  SGGB_RS09645 (SGGB_1890) - 1944099..1944755 (+) 657 WP_012962458.1 DUF1129 domain-containing protein -
  SGGB_RS09650 (SGGB_1891) - 1944801..1945250 (-) 450 WP_012962459.1 hypothetical protein -
  SGGB_RS09655 (SGGB_1892) - 1945252..1945461 (-) 210 WP_009854897.1 helix-turn-helix domain-containing protein -
  SGGB_RS09660 (SGGB_1893) - 1945464..1945988 (-) 525 WP_009854898.1 DUF2975 domain-containing protein -
  SGGB_RS09665 (SGGB_1894) rpsR 1946123..1946362 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  SGGB_RS09670 (SGGB_1895) ssbA 1946423..1946938 (-) 516 WP_009854899.1 single-stranded DNA-binding protein Machinery gene
  SGGB_RS09675 (SGGB_1896) rpsF 1946950..1947240 (-) 291 WP_009854900.1 30S ribosomal protein S6 -
  SGGB_RS09680 (SGGB_1897) - 1947466..1947612 (-) 147 WP_231087899.1 ATP-dependent protease -
  SGGB_RS09685 (SGGB_1898) - 1947856..1948404 (-) 549 WP_009854902.1 biotin transporter BioY -
  SGGB_RS09690 (SGGB_1899) bioD 1948404..1949072 (-) 669 WP_009854903.1 dethiobiotin synthase -
  SGGB_RS09695 (SGGB_1900) bioB 1949065..1950000 (-) 936 WP_009854904.1 biotin synthase BioB -
  SGGB_RS09700 (SGGB_1901) ahpF 1950277..1951815 (-) 1539 WP_009854905.1 alkyl hydroperoxide reductase subunit F -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18929.53 Da        Isoelectric Point: 4.7187

>NTDB_id=48931 SGGB_RS09670 WP_009854899.1 1946423..1946938(-) (ssbA) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLSNWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADNFQILESRATREGQSGGSYNGGFNNNNSSFGGSSNDGGFSSQPSQSQTPNFGRDESPFGNSN
PMDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=48931 SGGB_RS09670 WP_009854899.1 1946423..1946938(-) (ssbA) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGATTAATAATGTAGTACTTGTCGGTCGCATGACCCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCCGTTGC
CACATTTACACTTGCTGTAAACCGCAACTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTTATTAACTGTGTGATTT
GGCGCCAACAGGCAGAAAATCTGTCTAACTGGGCTAAAAAAGGCACATTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AATTATGAAAATCAACAAGGTCAACGTGTTTACGTAACAGAGATTGTTGCAGATAATTTCCAAATCTTGGAAAGCCGTGC
TACACGTGAAGGTCAATCAGGTGGTTCATATAACGGTGGATTCAACAATAACAATTCATCATTTGGCGGCTCATCAAACG
ATGGTGGTTTCTCATCGCAACCTTCACAATCACAAACACCTAACTTTGGTCGTGATGAAAGCCCGTTTGGCAATTCAAAT
CCAATGGACATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.222

100

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.596

Multiple sequence alignment