Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IF772_RS02140 Genome accession   NZ_CP062400
Coordinates   397563..398249 (+) Length   228 a.a.
NCBI ID   WP_072353822.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_107     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 392563..403249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF772_RS02105 (IF772_02090) yqeH 393090..394190 (+) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -
  IF772_RS02110 (IF772_02095) aroE 394204..395010 (+) 807 WP_000666748.1 shikimate dehydrogenase -
  IF772_RS02115 (IF772_02100) yhbY 395014..395304 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  IF772_RS02120 (IF772_02105) nadD 395307..395876 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  IF772_RS02125 (IF772_02110) yqeK 395866..396450 (+) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  IF772_RS02130 (IF772_02115) rsfS 396451..396804 (+) 354 WP_001088020.1 ribosome silencing factor -
  IF772_RS02135 (IF772_02120) - 396807..397523 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  IF772_RS02140 (IF772_02125) comEA 397563..398249 (+) 687 WP_072353822.1 ComEA family DNA-binding protein Machinery gene
  IF772_RS02145 (IF772_02130) - 398341..398802 (+) 462 WP_000439693.1 ComE operon protein 2 -
  IF772_RS02150 (IF772_02135) comEC 398807..401008 (+) 2202 WP_001815444.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IF772_RS02155 (IF772_02140) holA 401065..402039 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  IF772_RS02160 (IF772_02145) rpsT 402084..402335 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=489227 IF772_RS02140 WP_072353822.1 397563..398249(+) (comEA) [Staphylococcus aureus strain NAS_OP_107]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=489227 IF772_RS02140 WP_072353822.1 397563..398249(+) (comEA) [Staphylococcus aureus strain NAS_OP_107]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

97.807

100

0.978