Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IF777_RS10595 Genome accession   NZ_CP062399
Coordinates   2142116..2142511 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_143     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2137116..2147511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF777_RS10570 (IF777_10530) thiE 2137578..2138219 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  IF777_RS10575 (IF777_10535) thiM 2138221..2139012 (-) 792 WP_045173475.1 hydroxyethylthiazole kinase -
  IF777_RS10580 (IF777_10540) thiD 2138996..2139826 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IF777_RS10585 (IF777_10545) tenA 2139819..2140508 (-) 690 WP_045173472.1 thiaminase II -
  IF777_RS10590 (IF777_10550) sceD 2141032..2141727 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  IF777_RS10595 (IF777_10555) ssb 2142116..2142511 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  IF777_RS10600 (IF777_10560) - 2142705..2143145 (+) 441 WP_000846746.1 YwpF-like family protein -
  IF777_RS10605 (IF777_10565) fabZ 2143203..2143643 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IF777_RS10610 (IF777_10570) murA 2143677..2144942 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IF777_RS10615 (IF777_10575) - 2145053..2145286 (-) 234 WP_240053233.1 DUF1146 family protein -
  IF777_RS10620 (IF777_10580) - 2145418..2145510 (-) 93 WP_031929694.1 hypothetical protein -
  IF777_RS10625 (IF777_10585) - 2145846..2146250 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=489213 IF777_RS10595 WP_000932694.1 2142116..2142511(-) (ssb) [Staphylococcus aureus strain NAS_OP_143]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=489213 IF777_RS10595 WP_000932694.1 2142116..2142511(-) (ssb) [Staphylococcus aureus strain NAS_OP_143]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992