Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   IF777_RS04610 Genome accession   NZ_CP062399
Coordinates   954540..955526 (+) Length   328 a.a.
NCBI ID   WP_042909135.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_143     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 949540..960526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF777_RS04585 (IF777_04565) opp4B 949753..950715 (+) 963 WP_000915997.1 oligopeptide ABC transporter permease -
  IF777_RS04590 (IF777_04570) opp4C 950727..951608 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  IF777_RS04595 (IF777_04575) trpS 951650..952639 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  IF777_RS04600 (IF777_04580) spxA 952934..953329 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  IF777_RS04605 (IF777_04585) mecA 953700..954419 (+) 720 WP_240053302.1 adaptor protein MecA -
  IF777_RS04610 (IF777_04590) coiA 954540..955526 (+) 987 WP_042909135.1 competence protein CoiA family protein Machinery gene
  IF777_RS04615 (IF777_04595) pepF 955574..957382 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  IF777_RS04620 (IF777_04600) yjbH 957842..958648 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  IF777_RS04625 (IF777_04605) - 958671..959036 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  IF777_RS04630 (IF777_04610) - 959140..959733 (-) 594 WP_045172683.1 CYTH domain-containing protein -
  IF777_RS04635 (IF777_04615) - 959919..960266 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38813.48 Da        Isoelectric Point: 9.6054

>NTDB_id=489186 IF777_RS04610 WP_042909135.1 954540..955526(+) (coiA) [Staphylococcus aureus strain NAS_OP_143]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKLGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGFIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=489186 IF777_RS04610 WP_042909135.1 954540..955526(+) (coiA) [Staphylococcus aureus strain NAS_OP_143]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAACTGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCCGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTTTATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

98.171

100

0.982
  coiA Staphylococcus aureus MW2

97.561

100

0.976