Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IF694_RS12915 Genome accession   NZ_CP062395
Coordinates   2642210..2642605 (+) Length   131 a.a.
NCBI ID   WP_031927386.1    Uniprot ID   A0A6B5T6J9
Organism   Staphylococcus aureus strain NAS_AN_005     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2637210..2647605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF694_RS12885 (IF694_12740) - 2638412..2638816 (+) 405 WP_047213674.1 F0F1 ATP synthase subunit epsilon -
  IF694_RS12890 (IF694_12745) - 2639227..2639304 (+) 78 Protein_2503 hypothetical protein -
  IF694_RS12895 (IF694_12750) - 2639436..2639669 (+) 234 WP_000384523.1 DUF1146 family protein -
  IF694_RS12900 (IF694_12755) murA 2639780..2641045 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IF694_RS12905 (IF694_12760) fabZ 2641079..2641519 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IF694_RS12910 (IF694_12765) - 2641576..2642016 (-) 441 WP_047213672.1 YwpF-like family protein -
  IF694_RS12915 (IF694_12770) ssb 2642210..2642605 (+) 396 WP_031927386.1 single-stranded DNA-binding protein Machinery gene
  IF694_RS12920 (IF694_12775) sceD 2642994..2643689 (+) 696 WP_047213670.1 lytic transglycosylase SceD -
  IF694_RS12925 (IF694_12780) tenA 2644076..2644765 (+) 690 WP_047213668.1 thiaminase II -
  IF694_RS12930 (IF694_12785) thiD 2644758..2645588 (+) 831 WP_000594952.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IF694_RS12935 (IF694_12790) thiM 2645572..2646363 (+) 792 WP_001108488.1 hydroxyethylthiazole kinase -
  IF694_RS12940 (IF694_12795) thiE 2646365..2647006 (+) 642 WP_064138554.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15056.12 Da        Isoelectric Point: 5.6824

>NTDB_id=489132 IF694_RS12915 WP_031927386.1 2642210..2642605(+) (ssb) [Staphylococcus aureus strain NAS_AN_005]
MLNKIIIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=489132 IF694_RS12915 WP_031927386.1 2642210..2642605(+) (ssb) [Staphylococcus aureus strain NAS_AN_005]
ATGCTAAATAAAATCATAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B5T6J9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985