Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IF694_RS04090 Genome accession   NZ_CP062395
Coordinates   820153..821025 (-) Length   290 a.a.
NCBI ID   WP_047213389.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_005     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 815153..826025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF694_RS04080 (IF694_04025) trmFO 816441..817748 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  IF694_RS04085 (IF694_04030) topA 817904..819979 (-) 2076 WP_001557331.1 type I DNA topoisomerase -
  IF694_RS04090 (IF694_04035) dprA 820153..821025 (-) 873 WP_047213389.1 DNA-processing protein DprA Machinery gene
  IF694_RS04095 (IF694_04040) fmhC 821197..822441 (-) 1245 WP_000672857.1 FemA/FemB family glycyltransferase FmhC -
  IF694_RS04100 (IF694_04045) - 822469..822621 (-) 153 Protein_777 cell wall hydrolase -
  IF694_RS04110 (IF694_04050) sucD 822908..823816 (-) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  IF694_RS04115 (IF694_04055) sucC 823838..825004 (-) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  IF694_RS04120 (IF694_04060) - 825113..825880 (-) 768 WP_000176391.1 ribonuclease HII -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33558.00 Da        Isoelectric Point: 9.6077

>NTDB_id=489116 IF694_RS04090 WP_047213389.1 820153..821025(-) (dprA) [Staphylococcus aureus strain NAS_AN_005]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYHLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=489116 IF694_RS04090 WP_047213389.1 820153..821025(-) (dprA) [Staphylococcus aureus strain NAS_AN_005]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACCATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.621

100

0.986
  dprA Staphylococcus aureus N315

98.276

100

0.983