Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   KFU73_RS01065 Genome accession   NZ_CP073974
Coordinates   207025..207681 (+) Length   218 a.a.
NCBI ID   WP_000611338.1    Uniprot ID   -
Organism   Escherichia coli strain MB22     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 202025..212681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU73_RS01035 (KFU73_01020) dcyD 202904..203890 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  KFU73_RS01040 (KFU73_01025) tcyL 203905..204573 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  KFU73_RS01045 (KFU73_01030) tcyN 204570..205322 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  KFU73_RS01050 (KFU73_01035) sdiA 205552..206274 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  KFU73_RS01055 (KFU73_01040) yecF 206342..206566 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  KFU73_RS01060 (KFU73_01045) yecU 206553..206729 (-) 177 WP_001307856.1 protein YecU -
  KFU73_RS01065 (KFU73_01050) letA 207025..207681 (+) 657 WP_000611338.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  KFU73_RS01070 (KFU73_01055) uvrC 207678..209510 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  KFU73_RS01075 (KFU73_01060) pgsA 209567..210115 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KFU73_RS01095 (KFU73_01080) yecA 210765..211430 (+) 666 WP_000847880.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23908.65 Da        Isoelectric Point: 6.9614

>NTDB_id=489063 KFU73_RS01065 WP_000611338.1 207025..207681(+) (letA) [Escherichia coli strain MB22]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNSVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=489063 KFU73_RS01065 WP_000611338.1 207025..207681(+) (letA) [Escherichia coli strain MB22]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATTCCGTCGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACTTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.691

94.954

0.491
  letA Legionella pneumophila strain ERS1305867

51.691

94.954

0.491