Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   LP6_RS12135 Genome accession   NC_021350
Coordinates   2686882..2688234 (-) Length   450 a.a.
NCBI ID   WP_010948032.1    Uniprot ID   Q5ZT39
Organism   Legionella pneumophila subsp. pneumophila str. Thunder Bay     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2681882..2693234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP6_RS12120 (LP6_2350) pilU 2682622..2683743 (-) 1122 WP_010948029.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LP6_RS12125 (LP6_2351) - 2683833..2685761 (-) 1929 WP_010948030.1 FAD-binding oxidoreductase -
  LP6_RS12130 (LP6_2352) - 2686049..2686885 (-) 837 WP_010948031.1 phytanoyl-CoA dioxygenase family protein -
  LP6_RS12135 (LP6_2353) radA/sms 2686882..2688234 (-) 1353 WP_010948032.1 DNA repair protein RadA Machinery gene
  LP6_RS12140 (LP6_2354) - 2688469..2689362 (+) 894 WP_010948033.1 lpg2327 family Dot/Icm T4SS effector -
  LP6_RS12145 (LP6_2355) lem22 2689626..2690009 (+) 384 WP_010948034.1 Dot/Icm T4SS effector Lem22 -
  LP6_RS12150 (LP6_2356) - 2690203..2690433 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  LP6_RS12155 (LP6_2357) - 2690414..2691310 (+) 897 WP_015444138.1 polyprenyl synthetase family protein -
  LP6_RS12160 (LP6_2359) bioC 2691354..2692208 (-) 855 WP_015444137.1 malonyl-ACP O-methyltransferase BioC -
  LP6_RS12165 (LP6_2358) comFC 2692366..2692956 (+) 591 WP_015444136.1 ComF family protein Machinery gene

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 48916.58 Da        Isoelectric Point: 7.7495

>NTDB_id=48904 LP6_RS12135 WP_010948032.1 2686882..2688234(-) (radA/sms) [Legionella pneumophila subsp. pneumophila str. Thunder Bay]
MKVKTQFVCNQCAAIFKQWAGQCTQCGAWNSIVEEGIMPENKTLRSGQWANQRSVITAVEDVVMDKIVRMDCGISELNRV
LGGGLVYGSVVLIGGDPGIGKSTLLLQTLANLSMQETVLYVTGEESLQQVAMRAQRLGLPLAGLRLLAETQVESIIAQAQ
KEKPRIIVVDSVQTIFTEAISSAPGGVSQVRESAAQLVRYAKMTNTAIFLVGHVTKEGTLAGPRVLEHMVDSVLYFEGQN
DSRFRVIRAIKNRFGAVNELGVFAMTDKGLKEVANPSAIFLSRQPEPTPGSAVMVTWEGSRPMLVEVQALVDEAHGQQAK
RVTAGLEHNRLAILLAVLHRHGGIATYDQDVFINVVGGVKVTETASDLALLAAVISSLRNRIFDSETIIFGEVGLAGEIR
PVQSGQERIKEAIKHGFKRAIVPFANAPKQQIDSMTVEPVKHLRDVLEKM

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=48904 LP6_RS12135 WP_010948032.1 2686882..2688234(-) (radA/sms) [Legionella pneumophila subsp. pneumophila str. Thunder Bay]
ATGAAAGTGAAAACCCAGTTTGTTTGTAATCAATGCGCGGCCATTTTTAAACAATGGGCAGGACAATGTACTCAATGTGG
CGCCTGGAATTCCATTGTTGAAGAAGGGATTATGCCTGAAAACAAGACTTTACGAAGTGGGCAATGGGCTAATCAGCGCT
CTGTCATCACTGCTGTTGAAGACGTTGTAATGGACAAAATAGTACGTATGGATTGTGGTATATCCGAGCTCAACCGGGTT
TTGGGAGGGGGGCTGGTTTATGGCTCGGTTGTTTTGATTGGAGGGGATCCGGGGATCGGTAAATCCACCTTACTGTTGCA
AACGCTGGCTAATTTATCTATGCAAGAAACAGTATTGTATGTGACGGGGGAAGAGTCATTACAACAAGTTGCCATGCGTG
CCCAAAGATTGGGACTACCTTTGGCCGGACTGCGGCTATTGGCAGAAACTCAGGTTGAATCCATCATTGCTCAAGCCCAA
AAGGAAAAGCCGCGAATTATTGTCGTCGATTCAGTACAAACGATATTCACTGAAGCCATAAGTTCTGCTCCGGGAGGAGT
TAGTCAAGTCAGGGAATCGGCAGCACAATTGGTGCGTTATGCCAAGATGACCAATACGGCCATCTTCCTGGTAGGGCATG
TCACCAAGGAAGGAACATTAGCCGGGCCTCGGGTGTTAGAACATATGGTTGATAGTGTTCTCTATTTTGAGGGGCAAAAT
GATAGCCGCTTCAGAGTCATTCGCGCCATTAAAAATCGTTTTGGCGCTGTCAATGAATTAGGTGTATTTGCGATGACTGA
CAAAGGCCTGAAGGAGGTAGCCAACCCCTCAGCTATTTTTTTATCTCGCCAGCCCGAACCTACGCCTGGCAGTGCAGTGA
TGGTGACTTGGGAAGGATCAAGACCCATGTTGGTAGAAGTACAAGCATTGGTTGATGAGGCCCACGGTCAGCAAGCGAAA
CGCGTTACTGCGGGTCTTGAGCATAATCGCCTGGCTATCTTGTTAGCTGTTTTACACCGTCATGGAGGTATCGCTACTTA
CGATCAGGATGTTTTTATCAATGTAGTCGGGGGAGTGAAAGTGACTGAAACAGCGAGTGATTTGGCTTTGTTGGCTGCAG
TGATTTCAAGTTTACGTAATCGTATATTTGATAGTGAAACCATCATATTCGGTGAAGTGGGATTAGCGGGGGAAATCAGA
CCAGTGCAAAGTGGTCAAGAACGCATTAAGGAGGCTATAAAACATGGATTCAAGCGTGCTATAGTCCCTTTTGCCAATGC
TCCCAAACAGCAAATCGATTCCATGACGGTAGAGCCAGTTAAACATTTGCGAGATGTATTGGAGAAAATGTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

AAA domain (AAA_25)

(73-218)

Subunit ChlI of Mg-chelatase (ChlI)

(328-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZT39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.26

95.778

0.462
  radA Streptococcus mitis SK321

48.104

93.778

0.451
  radA Streptococcus pneumoniae Rx1

48.104

93.778

0.451
  radA Streptococcus pneumoniae D39

48.104

93.778

0.451
  radA Streptococcus pneumoniae R6

48.104

93.778

0.451
  radA Streptococcus pneumoniae TIGR4

48.104

93.778

0.451
  radA Streptococcus mitis NCTC 12261

47.867

93.778

0.449

Multiple sequence alignment