Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IF699_RS05860 Genome accession   NZ_CP062390
Coordinates   1168773..1169216 (-) Length   147 a.a.
NCBI ID   WP_158109069.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_036     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1163773..1174216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF699_RS05810 (IF699_05810) - 1163885..1164133 (-) 249 WP_001126846.1 phi PVL orf 51-like protein -
  IF699_RS05815 (IF699_05815) - 1164134..1164505 (-) 372 WP_001140289.1 SA1788 family PVL leukocidin-associated protein -
  IF699_RS05820 (IF699_05820) - 1164506..1164691 (-) 186 WP_001187242.1 DUF3113 family protein -
  IF699_RS05825 (IF699_05825) - 1164696..1165100 (-) 405 WP_000049784.1 DUF1064 domain-containing protein -
  IF699_RS05830 (IF699_05830) - 1165111..1165332 (-) 222 WP_001123673.1 DUF3269 family protein -
  IF699_RS05835 (IF699_05835) - 1165345..1165506 (-) 162 WP_000237153.1 hypothetical protein -
  IF699_RS05840 (IF699_05840) - 1165500..1166279 (-) 780 WP_000803065.1 ATP-binding protein -
  IF699_RS05845 (IF699_05845) - 1166289..1167059 (-) 771 WP_240024586.1 conserved phage C-terminal domain-containing protein -
  IF699_RS05850 (IF699_05850) - 1167124..1167981 (+) 858 WP_000371250.1 DUF4393 domain-containing protein -
  IF699_RS05855 (IF699_05855) - 1168087..1168761 (-) 675 WP_031899480.1 putative HNHc nuclease -
  IF699_RS05860 (IF699_05860) ssbA 1168773..1169216 (-) 444 WP_158109069.1 single-stranded DNA-binding protein Machinery gene
  IF699_RS05865 (IF699_05865) - 1169213..1169863 (-) 651 WP_000840496.1 ERF family protein -
  IF699_RS05870 (IF699_05870) - 1169864..1170400 (-) 537 WP_001004336.1 host-nuclease inhibitor Gam family protein -
  IF699_RS05875 (IF699_05875) - 1170413..1170673 (-) 261 WP_001556704.1 DUF1108 family protein -
  IF699_RS05880 (IF699_05880) - 1170678..1170995 (-) 318 WP_000829610.1 hypothetical protein -
  IF699_RS05885 (IF699_05885) - 1171088..1171249 (-) 162 WP_000066011.1 DUF1270 domain-containing protein -
  IF699_RS05890 (IF699_05890) - 1171242..1171463 (-) 222 WP_000977381.1 hypothetical protein -
  IF699_RS05895 (IF699_05895) - 1171534..1172199 (+) 666 WP_031764600.1 hypothetical protein -
  IF699_RS05900 - 1172220..1172288 (-) 69 Protein_1138 hypothetical protein -
  IF699_RS05905 (IF699_05900) - 1172328..1172552 (-) 225 WP_000187184.1 hypothetical protein -
  IF699_RS05910 (IF699_05905) - 1172553..1173332 (-) 780 WP_001148557.1 phage antirepressor KilAC domain-containing protein -
  IF699_RS05915 (IF699_05910) - 1173389..1173598 (+) 210 WP_000642492.1 hypothetical protein -
  IF699_RS05920 (IF699_05915) - 1173588..1173731 (-) 144 WP_000939498.1 hypothetical protein -
  IF699_RS05925 (IF699_05920) - 1173820..1174011 (-) 192 WP_001115060.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16298.85 Da        Isoelectric Point: 5.1086

>NTDB_id=489038 IF699_RS05860 WP_158109069.1 1168773..1169216(-) (ssbA) [Staphylococcus aureus strain NAS_AN_036]
MNTVNLIGNLVADPELKGQNNNVVNFVIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSY
ENNQGQKVFTTDIAVNNITFVERKNNGQSNNQQQNNSYNAPQNRQQSNNPFANANGPIEISDDDLPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=489038 IF699_RS05860 WP_158109069.1 1168773..1169216(-) (ssbA) [Staphylococcus aureus strain NAS_AN_036]
ATGAATACAGTAAATTTAATTGGGAACCTAGTGGCAGATCCAGAGTTAAAAGGTCAAAACAACAACGTAGTTAACTTTGT
AATCGCAGTACAGAGACCATTCAAAAACAAACAAACTAACGAATATGAAACAGACTTCATTCGTTGTGTTGCATTTGGTA
AGACTGCTGAAATCATCGCTAATAACTTTAATAAAGGTAATAAAATTGGCGTTACTGGTTCAATACAAACCGGTAGTTAT
GAAAATAATCAAGGACAGAAAGTGTTTACTACAGACATCGCAGTCAACAATATAACTTTCGTTGAACGTAAAAACAACGG
TCAATCTAACAACCAACAACAGAATAATTCATATAACGCACCACAGAATAGACAGCAATCAAATAATCCATTTGCTAATG
CTAATGGTCCTATAGAAATCTCTGACGATGATTTACCTTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(1-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.279

100

0.483
  ssb Latilactobacillus sakei subsp. sakei 23K

38.235

100

0.442