Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IF702_RS12860 Genome accession   NZ_CP062384
Coordinates   2621785..2622180 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_050     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2616785..2627180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF702_RS12835 (IF702_12780) - 2618011..2618415 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  IF702_RS12840 (IF702_12790) - 2619012..2619245 (+) 234 WP_000384523.1 DUF1146 family protein -
  IF702_RS12845 (IF702_12795) murA 2619356..2620621 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IF702_RS12850 (IF702_12800) fabZ 2620655..2621095 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IF702_RS12855 (IF702_12805) - 2621151..2621591 (-) 441 WP_000846751.1 YwpF-like family protein -
  IF702_RS12860 (IF702_12810) ssb 2621785..2622180 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  IF702_RS12865 (IF702_12815) sceD 2622569..2623264 (+) 696 WP_000752011.1 lytic transglycosylase SceD -
  IF702_RS12870 (IF702_12820) tenA 2623652..2624341 (+) 690 WP_240023988.1 thiaminase II -
  IF702_RS12875 (IF702_12825) thiD 2624334..2625164 (+) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IF702_RS12880 (IF702_12830) thiM 2625148..2625939 (+) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  IF702_RS12885 (IF702_12835) thiE 2625941..2626582 (+) 642 WP_000483162.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=488924 IF702_RS12860 WP_000932694.1 2621785..2622180(+) (ssb) [Staphylococcus aureus strain NAS_AN_050]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=488924 IF702_RS12860 WP_000932694.1 2621785..2622180(+) (ssb) [Staphylococcus aureus strain NAS_AN_050]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992