Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IF703_RS04535 Genome accession   NZ_CP062382
Coordinates   884397..885269 (-) Length   290 a.a.
NCBI ID   WP_240024693.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_068     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 879397..890269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF703_RS04525 (IF703_04480) trmFO 880685..881992 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  IF703_RS04530 (IF703_04485) topA 882148..884223 (-) 2076 WP_001557331.1 type I DNA topoisomerase -
  IF703_RS04535 (IF703_04490) dprA 884397..885269 (-) 873 WP_240024693.1 DNA-processing protein DprA Machinery gene
  IF703_RS04540 (IF703_04495) fmhC 885441..886684 (-) 1244 Protein_868 FemA/FemB family glycyltransferase FmhC -
  IF703_RS04545 (IF703_04500) - 886712..886864 (-) 153 Protein_869 cell wall hydrolase -
  IF703_RS14850 - 886869..886924 (-) 56 Protein_870 YSIRK-type signal peptide-containing protein -
  IF703_RS04555 (IF703_04505) sucD 887111..888019 (-) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  IF703_RS04560 (IF703_04510) sucC 888041..889207 (-) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  IF703_RS04565 (IF703_04515) - 889316..890083 (-) 768 WP_000176391.1 ribonuclease HII -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33497.97 Da        Isoelectric Point: 9.5436

>NTDB_id=488868 IF703_RS04535 WP_240024693.1 884397..885269(-) (dprA) [Staphylococcus aureus strain NAS_AN_068]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSCI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYHLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=488868 IF703_RS04535 WP_240024693.1 884397..885269(-) (dprA) [Staphylococcus aureus strain NAS_AN_068]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTGCATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACCATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.276

100

0.983
  dprA Staphylococcus aureus N315

97.931

100

0.979