Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IF704_RS13405 Genome accession   NZ_CP062380
Coordinates   2710060..2710455 (+) Length   131 a.a.
NCBI ID   WP_031927386.1    Uniprot ID   A0A6B5T6J9
Organism   Staphylococcus aureus strain NAS_AN_076     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2705060..2715455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF704_RS13375 (IF704_13230) - 2706262..2706666 (+) 405 WP_047213674.1 F0F1 ATP synthase subunit epsilon -
  IF704_RS13380 (IF704_13235) - 2707077..2707154 (+) 78 Protein_2601 hypothetical protein -
  IF704_RS13385 (IF704_13240) - 2707286..2707519 (+) 234 WP_000384523.1 DUF1146 family protein -
  IF704_RS13390 (IF704_13245) murA 2707630..2708895 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IF704_RS13395 (IF704_13250) fabZ 2708929..2709369 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IF704_RS13400 (IF704_13255) - 2709426..2709866 (-) 441 WP_047213672.1 YwpF-like family protein -
  IF704_RS13405 (IF704_13260) ssb 2710060..2710455 (+) 396 WP_031927386.1 single-stranded DNA-binding protein Machinery gene
  IF704_RS13410 (IF704_13265) sceD 2710844..2711539 (+) 696 WP_047213670.1 lytic transglycosylase SceD -
  IF704_RS13415 (IF704_13270) tenA 2711926..2712615 (+) 690 WP_047213668.1 thiaminase II -
  IF704_RS13420 (IF704_13275) thiD 2712608..2713438 (+) 831 WP_000594952.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IF704_RS13425 (IF704_13280) thiM 2713422..2714213 (+) 792 WP_001108488.1 hydroxyethylthiazole kinase -
  IF704_RS13430 (IF704_13285) thiE 2714215..2714856 (+) 642 WP_064138554.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15056.12 Da        Isoelectric Point: 5.6824

>NTDB_id=488844 IF704_RS13405 WP_031927386.1 2710060..2710455(+) (ssb) [Staphylococcus aureus strain NAS_AN_076]
MLNKIIIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=488844 IF704_RS13405 WP_031927386.1 2710060..2710455(+) (ssb) [Staphylococcus aureus strain NAS_AN_076]
ATGCTAAATAAAATCATAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B5T6J9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985