Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IF704_RS04580 Genome accession   NZ_CP062380
Coordinates   888087..888959 (-) Length   290 a.a.
NCBI ID   WP_047213389.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_076     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 883087..893959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF704_RS04570 (IF704_04515) trmFO 884375..885682 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  IF704_RS04575 (IF704_04520) topA 885838..887913 (-) 2076 WP_001557331.1 type I DNA topoisomerase -
  IF704_RS04580 (IF704_04525) dprA 888087..888959 (-) 873 WP_047213389.1 DNA-processing protein DprA Machinery gene
  IF704_RS04585 (IF704_04530) fmhC 889131..890375 (-) 1245 WP_000672857.1 FemA/FemB family glycyltransferase FmhC -
  IF704_RS04590 (IF704_04535) - 890403..890555 (-) 153 Protein_877 cell wall hydrolase -
  IF704_RS14385 - 890560..890615 (-) 56 Protein_878 YSIRK-type signal peptide-containing protein -
  IF704_RS04600 (IF704_04540) sucD 890842..891750 (-) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  IF704_RS04605 (IF704_04545) sucC 891772..892938 (-) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  IF704_RS04610 (IF704_04550) - 893047..893814 (-) 768 WP_000176391.1 ribonuclease HII -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33558.00 Da        Isoelectric Point: 9.6077

>NTDB_id=488828 IF704_RS04580 WP_047213389.1 888087..888959(-) (dprA) [Staphylococcus aureus strain NAS_AN_076]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYHLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=488828 IF704_RS04580 WP_047213389.1 888087..888959(-) (dprA) [Staphylococcus aureus strain NAS_AN_076]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACCATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.621

100

0.986
  dprA Staphylococcus aureus N315

98.276

100

0.983