Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IF704_RS02565 Genome accession   NZ_CP062380
Coordinates   459557..460243 (+) Length   228 a.a.
NCBI ID   WP_072357801.1    Uniprot ID   A0A6B5EZE0
Organism   Staphylococcus aureus strain NAS_AN_076     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 454557..465243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF704_RS02530 (IF704_02505) yqeH 455084..456184 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  IF704_RS02535 (IF704_02510) aroE 456198..457004 (+) 807 WP_000666752.1 shikimate dehydrogenase -
  IF704_RS02540 (IF704_02515) yhbY 457008..457298 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  IF704_RS02545 (IF704_02520) nadD 457301..457870 (+) 570 WP_000725160.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  IF704_RS02550 (IF704_02525) yqeK 457860..458444 (+) 585 WP_001019325.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  IF704_RS02555 (IF704_02530) rsfS 458445..458798 (+) 354 WP_001088020.1 ribosome silencing factor -
  IF704_RS02560 (IF704_02535) - 458801..459517 (+) 717 WP_000084828.1 class I SAM-dependent methyltransferase -
  IF704_RS02565 (IF704_02540) comEA 459557..460243 (+) 687 WP_072357801.1 ComEA family DNA-binding protein Machinery gene
  IF704_RS02570 (IF704_02545) - 460335..460796 (+) 462 WP_000439693.1 ComE operon protein 2 -
  IF704_RS02575 (IF704_02550) comEC 460801..463002 (+) 2202 WP_064138536.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IF704_RS02580 (IF704_02555) holA 463059..464033 (+) 975 WP_001282559.1 DNA polymerase III subunit delta -
  IF704_RS02585 (IF704_02560) rpsT 464078..464329 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25759.47 Da        Isoelectric Point: 9.6753

>NTDB_id=488815 IF704_RS02565 WP_072357801.1 459557..460243(+) (comEA) [Staphylococcus aureus strain NAS_AN_076]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLSDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNINNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=488815 IF704_RS02565 WP_072357801.1 459557..460243(+) (comEA) [Staphylococcus aureus strain NAS_AN_076]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTATCAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGAAACATAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B5EZE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.797

99.561

0.974
  comEA Staphylococcus aureus N315

97.797

99.561

0.974