Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   IF707_RS07150 Genome accession   NZ_CP062376
Coordinates   1451146..1451715 (-) Length   189 a.a.
NCBI ID   WP_045176736.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_099     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1446146..1456715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF707_RS07110 (IF707_07095) - 1446620..1447228 (-) 609 WP_240017394.1 class I SAM-dependent methyltransferase -
  IF707_RS07115 (IF707_07100) rplL 1447403..1447771 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  IF707_RS07120 (IF707_07105) rplJ 1447814..1448314 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  IF707_RS07125 (IF707_07110) rplA 1448586..1449278 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  IF707_RS07130 (IF707_07115) rplK 1449486..1449908 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  IF707_RS07135 (IF707_07120) nusG 1450089..1450637 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  IF707_RS07140 (IF707_07125) secE 1450650..1450832 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  IF707_RS07145 (IF707_07130) rpmG 1450888..1451031 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  IF707_RS07150 (IF707_07135) sigH 1451146..1451715 (-) 570 WP_045176736.1 RNA polymerase sigma factor Regulator
  IF707_RS07155 (IF707_07140) - 1451796..1452320 (-) 525 WP_000664738.1 NYN domain-containing protein -
  IF707_RS07160 (IF707_07145) rlmB 1452320..1453066 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IF707_RS07165 (IF707_07150) - 1453074..1453478 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  IF707_RS07170 (IF707_07155) cysS 1453471..1454871 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  IF707_RS07175 (IF707_07160) cysE 1454855..1455502 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23113.96 Da        Isoelectric Point: 9.5790

>NTDB_id=488750 IF707_RS07150 WP_045176736.1 1451146..1451715(-) (sigH) [Staphylococcus aureus strain NAS_AN_099]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQYKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=488750 IF707_RS07150 WP_045176736.1 1451146..1451715(-) (sigH) [Staphylococcus aureus strain NAS_AN_099]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTATAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979