Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IF707_RS02150 Genome accession   NZ_CP062376
Coordinates   403909..404595 (+) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_099     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 398909..409595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF707_RS02115 (IF707_02115) yqeH 399436..400536 (+) 1101 WP_001280138.1 ribosome biogenesis GTPase YqeH -
  IF707_RS02120 (IF707_02120) aroE 400550..401356 (+) 807 WP_000666757.1 shikimate dehydrogenase -
  IF707_RS02125 (IF707_02125) yhbY 401360..401650 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  IF707_RS02130 (IF707_02130) nadD 401653..402222 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  IF707_RS02135 (IF707_02135) yqeK 402212..402796 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  IF707_RS02140 (IF707_02140) rsfS 402797..403150 (+) 354 WP_001088020.1 ribosome silencing factor -
  IF707_RS02145 (IF707_02145) - 403153..403869 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  IF707_RS02150 (IF707_02150) comEA 403909..404595 (+) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  IF707_RS02155 (IF707_02155) - 404687..405148 (+) 462 WP_000439693.1 ComE operon protein 2 -
  IF707_RS02160 (IF707_02160) comEC 405153..407354 (+) 2202 WP_001641560.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IF707_RS02165 (IF707_02165) holA 407411..408385 (+) 975 WP_001282561.1 DNA polymerase III subunit delta -
  IF707_RS02170 (IF707_02170) rpsT 408430..408681 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=488730 IF707_RS02150 WP_001788928.1 403909..404595(+) (comEA) [Staphylococcus aureus strain NAS_AN_099]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=488730 IF707_RS02150 WP_001788928.1 403909..404595(+) (comEA) [Staphylococcus aureus strain NAS_AN_099]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969