Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RSPO_RS10740 Genome accession   NC_017574
Coordinates   2358166..2360706 (-) Length   846 a.a.
NCBI ID   WP_014617396.1    Uniprot ID   F6G2D6
Organism   Ralstonia solanacearum Po82     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2353166..2365706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSPO_RS10720 (RSPO_c02248) - 2353653..2354567 (-) 915 WP_014617393.1 proteasome-type protease -
  RSPO_RS10725 (RSPO_c02249) - 2354652..2355488 (-) 837 WP_039549867.1 transglutaminase family protein -
  RSPO_RS10730 (RSPO_c02250) - 2355546..2356508 (-) 963 WP_014617395.1 alpha-E domain-containing protein -
  RSPO_RS10735 (RSPO_c02251) - 2356579..2358060 (-) 1482 WP_003264255.1 circularly permuted type 2 ATP-grasp protein -
  RSPO_RS10740 (RSPO_c02252) comA 2358166..2360706 (-) 2541 WP_014617396.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RSPO_RS10745 (RSPO_c02253) - 2360716..2361531 (-) 816 WP_014617397.1 TatD family hydrolase -
  RSPO_RS10750 (RSPO_c02254) lolD 2361551..2362294 (-) 744 WP_014617398.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  RSPO_RS10755 - 2362287..2363537 (-) 1251 WP_003268713.1 lipoprotein-releasing ABC transporter permease subunit -
  RSPO_RS10760 (RSPO_c02256) - 2363610..2364689 (+) 1080 WP_014617400.1 hypothetical protein -

Sequence

Protein


Download         Length: 846 a.a.        Molecular weight: 90342.86 Da        Isoelectric Point: 10.1608

>NTDB_id=48873 RSPO_RS10740 WP_014617396.1 2358166..2360706(-) (comA) [Ralstonia solanacearum Po82]
MRALLIGFVAGCMALQTRPVLVPVWQPVLLALACGLIALALRRAGQSPMLISGIAVLVAACVGFGWSDWRAQQRLSVVLA
PEWEGKAIQATGVVAELPQVTEDATRFLFHIESSDAGDAVPPRVRLSWYGKRNWNERRRERGAIADRRAGIPDLQPGQRW
QLTLRLKRPHSLMNPGGFDGEYAMLADDIRAAGTVQTGKRARNALIGETDAGFGLQVERWRAAVRRHILAALPDARYGPV
MVALVVGDQSGIAQADWERFRRTGISHLVSISGLHITMIAGLFAALWMALWRRSFGLARWLRTPLPLRMPAQRAAAIAAM
AAAFAYCLLAGMGVPAQRTLLMLATVAVARLTDRSVPASLSLCWAAAVVALVDPWAVMSAGFWLSFGAVAVIFLAARMAA
ADAGGDARPSAWLRRAWRGLRGGARIQLAVTVGLLPLTLLLFQQVSVVSAAANALAIPVVSLVTTPLALIGAALPEPWAQ
PVLAWAEASFGWLVSWLDGLSAPAWSVWTAPVAPAWAWLLAIGGVPLLLAPGGHRAWAWRAQGVLLLLPMLLARAPAPPP
GAFRLVAFDIGQGAAALVETAGHRLLFDTGPRYGDLADAADRVIVPYLRGHGVQAIDTLVVSHEDSDHAGGTETVMAGVP
VRTMLASLPPGHRLGERARAYGIDTAGCLAGQRWTWDGVAFEILHPVQAPPDRAPPSSNARSCVLRIAGERHAALLAGDI
GSAQEMALIAAEAPERLMADILLVPHHGSKTSSSGAFLDAVSPQVAIFQVGYRNRYGHPHPQVWQRYGARDIERLRTDAA
GAVVIETGGDALEVRTARSMRPRYWSSALEVAALADATEAPADAQP

Nucleotide


Download         Length: 2541 bp        

>NTDB_id=48873 RSPO_RS10740 WP_014617396.1 2358166..2360706(-) (comA) [Ralstonia solanacearum Po82]
ATGCGCGCCCTGCTGATCGGCTTTGTCGCGGGGTGCATGGCGTTGCAGACGCGGCCGGTGCTGGTGCCGGTCTGGCAGCC
GGTGCTGCTGGCGCTGGCGTGCGGTTTGATTGCGTTGGCGTTGCGGCGCGCGGGGCAGTCGCCGATGCTCATCTCCGGGA
TTGCCGTGCTGGTGGCTGCGTGTGTCGGTTTCGGCTGGAGCGACTGGCGCGCGCAGCAGCGGCTGTCCGTGGTGCTGGCG
CCCGAATGGGAAGGCAAGGCCATCCAGGCGACGGGCGTCGTGGCCGAGCTGCCGCAGGTCACCGAGGACGCCACGCGTTT
CCTGTTCCACATCGAATCCAGCGACGCAGGCGACGCCGTGCCGCCGCGCGTGCGCCTGTCATGGTATGGCAAGCGCAACT
GGAACGAACGGAGGCGGGAGCGTGGGGCGATCGCCGATCGCCGTGCCGGCATCCCCGACCTGCAGCCCGGCCAGCGCTGG
CAACTGACGCTGCGGCTCAAGCGGCCGCACAGCCTGATGAATCCCGGCGGCTTCGACGGCGAATACGCGATGCTCGCCGA
CGACATCCGCGCCGCGGGCACCGTGCAGACCGGCAAACGCGCGCGCAATGCGCTGATCGGCGAAACCGATGCCGGCTTCG
GTCTCCAGGTCGAGCGCTGGCGTGCCGCGGTGCGGCGGCATATCCTCGCCGCCTTGCCCGATGCGCGTTATGGGCCGGTG
ATGGTCGCCCTGGTGGTGGGCGATCAGAGCGGCATCGCGCAAGCGGATTGGGAGCGCTTCCGCCGCACCGGCATCAGCCA
TCTCGTCAGCATTTCCGGCCTGCACATCACGATGATCGCCGGGCTGTTCGCCGCGCTCTGGATGGCGCTGTGGCGGCGCT
CGTTCGGCCTGGCCCGCTGGTTGCGCACGCCGTTGCCGCTGCGCATGCCGGCCCAGCGCGCCGCCGCCATCGCGGCGATG
GCGGCGGCGTTCGCCTATTGCCTGCTGGCGGGGATGGGCGTGCCGGCGCAGCGCACGCTGCTGATGCTCGCGACCGTCGC
CGTGGCGCGGCTGACCGATCGCAGCGTGCCGGCCAGCCTGTCGCTGTGCTGGGCTGCGGCCGTGGTGGCGCTGGTGGATC
CTTGGGCGGTCATGTCGGCGGGATTTTGGCTGTCGTTCGGCGCGGTGGCGGTCATCTTCCTGGCCGCGCGGATGGCGGCC
GCCGATGCCGGGGGCGATGCCCGGCCATCCGCCTGGCTCAGGCGCGCCTGGCGCGGCCTGCGCGGCGGCGCCCGCATCCA
GTTGGCCGTGACGGTCGGCCTGCTGCCGTTGACGCTGCTGTTGTTCCAGCAGGTCTCGGTGGTGTCGGCCGCGGCCAACG
CGCTCGCGATTCCGGTGGTCAGCCTGGTCACCACGCCGCTGGCGTTGATCGGCGCGGCGCTGCCTGAGCCGTGGGCGCAG
CCGGTGCTGGCGTGGGCCGAGGCCAGCTTCGGGTGGCTCGTGTCGTGGCTGGATGGACTGTCGGCGCCCGCCTGGTCGGT
GTGGACGGCGCCCGTCGCGCCCGCCTGGGCGTGGCTGTTGGCCATCGGCGGCGTGCCGTTGCTGCTCGCGCCGGGCGGGC
ATCGCGCCTGGGCCTGGCGGGCGCAGGGCGTGCTCCTGCTGCTGCCGATGCTGCTCGCTCGTGCGCCGGCACCGCCGCCG
GGCGCGTTCCGCCTGGTCGCATTCGACATCGGTCAGGGCGCCGCCGCGCTGGTCGAGACGGCCGGCCACCGGCTGCTGTT
CGATACCGGCCCGCGCTATGGCGACCTGGCCGATGCCGCCGATCGTGTGATCGTCCCGTATCTGCGCGGACACGGCGTGC
AGGCCATCGATACGCTGGTGGTCAGCCACGAGGACAGCGACCACGCCGGCGGCACCGAAACGGTGATGGCCGGGGTGCCG
GTGCGCACCATGCTGGCGTCCTTGCCGCCCGGCCACCGGCTCGGCGAGCGGGCCCGCGCCTACGGCATCGATACCGCGGG
CTGCCTGGCGGGGCAGCGCTGGACCTGGGATGGCGTTGCCTTCGAAATCCTGCATCCGGTGCAGGCGCCCCCCGATAGGG
CGCCGCCGTCCAGCAACGCCCGCAGCTGCGTGCTGCGCATTGCCGGCGAGCGCCATGCCGCCTTGCTGGCCGGCGACATC
GGCAGCGCCCAGGAAATGGCGCTGATCGCCGCCGAAGCGCCGGAGCGGCTCATGGCAGATATCTTGCTTGTGCCCCATCA
CGGCAGCAAGACGAGCTCCAGCGGTGCGTTTCTGGACGCGGTTTCTCCGCAGGTGGCGATTTTCCAGGTCGGCTACCGCA
ACCGGTATGGTCATCCGCATCCGCAGGTCTGGCAGCGCTACGGCGCGCGCGACATCGAGCGGTTGCGTACCGACGCAGCC
GGGGCCGTCGTCATCGAGACGGGCGGCGATGCACTGGAGGTGCGGACCGCGCGGTCGATGCGGCCGCGCTACTGGTCCTC
GGCGCTCGAGGTGGCAGCCCTGGCAGACGCCACGGAGGCGCCCGCCGACGCGCAGCCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(23-197)

Beta-lactamase superfamily domain (Lactamase_B_2)

(583-743)

Competence protein (Competence)

(244-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6G2D6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

85.377

100

0.856

Multiple sequence alignment