Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   IF711_RS05200 Genome accession   NZ_CP062370
Coordinates   1045697..1046683 (-) Length   328 a.a.
NCBI ID   WP_240024498.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_111     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1040697..1051683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF711_RS05175 (IF711_05160) - 1040957..1041304 (-) 348 WP_001242103.1 hypothetical protein -
  IF711_RS05180 (IF711_05165) - 1041490..1042083 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  IF711_RS05185 (IF711_05170) - 1042187..1042552 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  IF711_RS05190 (IF711_05175) yjbH 1042575..1043381 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  IF711_RS05195 (IF711_05180) pepF 1043841..1045649 (-) 1809 WP_240022014.1 oligoendopeptidase F -
  IF711_RS05200 (IF711_05185) coiA 1045697..1046683 (-) 987 WP_240024498.1 competence protein CoiA family protein Machinery gene
  IF711_RS05205 (IF711_05190) mecA 1046804..1047523 (-) 720 WP_240022015.1 adaptor protein MecA -
  IF711_RS05210 (IF711_05195) spxA 1047894..1048289 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  IF711_RS05215 (IF711_05200) trpS 1048583..1049572 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  IF711_RS05220 (IF711_05205) opp4C 1049614..1050495 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  IF711_RS05225 (IF711_05210) opp4B 1050507..1051469 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38877.56 Da        Isoelectric Point: 9.6401

>NTDB_id=488662 IF711_RS05200 WP_240024498.1 1045697..1046683(-) (coiA) [Staphylococcus aureus strain NAS_AN_111]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLQPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=488662 IF711_RS05200 WP_240024498.1 1045697..1046683(-) (coiA) [Staphylococcus aureus strain NAS_AN_111]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTACAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

99.695

100

0.997
  coiA Staphylococcus aureus MW2

97.256

100

0.973