Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KFU68_RS05800 Genome accession   NZ_CP073946
Coordinates   1198219..1198956 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain MB51     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1193219..1203956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU68_RS05770 (KFU68_05725) yfiL 1193359..1193724 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  KFU68_RS05775 (KFU68_05730) aroF 1193934..1195004 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KFU68_RS05780 (KFU68_05735) tyrA 1195015..1196136 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KFU68_RS05785 (KFU68_05740) pheA 1196179..1197339 (-) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  KFU68_RS05790 (KFU68_05745) pheL 1197438..1197485 (-) 48 WP_010723158.1 phe operon leader peptide -
  KFU68_RS05795 (KFU68_05750) raiA 1197589..1197948 (-) 360 WP_000178458.1 ribosome-associated translation inhibitor RaiA -
  KFU68_RS05800 (KFU68_05755) comL 1198219..1198956 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KFU68_RS05805 (KFU68_05760) rluD 1199091..1200071 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KFU68_RS05810 (KFU68_05765) yfiH 1200068..1200799 (+) 732 WP_113449681.1 purine nucleoside phosphorylase YfiH -
  KFU68_RS05815 (KFU68_05770) clpC 1200929..1203502 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=488590 KFU68_RS05800 WP_000197686.1 1198219..1198956(-) (comL) [Escherichia coli strain MB51]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=488590 KFU68_RS05800 WP_000197686.1 1198219..1198956(-) (comL) [Escherichia coli strain MB51]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376