Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IF722_RS10440 Genome accession   NZ_CP062360
Coordinates   2106550..2106945 (-) Length   131 a.a.
NCBI ID   WP_240025164.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_157     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2101550..2111945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF722_RS10415 (IF722_10370) thiE 2102149..2102790 (-) 642 WP_000483160.1 thiamine phosphate synthase -
  IF722_RS10420 (IF722_10375) thiM 2102792..2103583 (-) 792 WP_001108484.1 hydroxyethylthiazole kinase -
  IF722_RS10425 (IF722_10380) thiD 2103567..2104397 (-) 831 WP_000594952.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IF722_RS10430 (IF722_10385) tenA 2104390..2105079 (-) 690 WP_000396067.1 thiaminase II -
  IF722_RS10435 (IF722_10390) sceD 2105466..2106161 (-) 696 WP_000751999.1 lytic transglycosylase SceD -
  IF722_RS10440 (IF722_10395) ssb 2106550..2106945 (-) 396 WP_240025164.1 single-stranded DNA-binding protein Machinery gene
  IF722_RS10445 (IF722_10400) - 2107139..2107579 (+) 441 WP_000846746.1 YwpF-like family protein -
  IF722_RS10450 (IF722_10405) fabZ 2107636..2108076 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IF722_RS10455 (IF722_10410) murA 2108110..2109375 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IF722_RS10460 (IF722_10415) - 2109486..2109719 (-) 234 WP_000384523.1 DUF1146 family protein -
  IF722_RS10465 (IF722_10420) - 2109851..2109928 (-) 78 Protein_2023 hypothetical protein -
  IF722_RS10470 (IF722_10425) - 2110339..2110743 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15043.03 Da        Isoelectric Point: 4.9705

>NTDB_id=488466 IF722_RS10440 WP_240025164.1 2106550..2106945(-) (ssb) [Staphylococcus aureus strain NAS_AN_157]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDEDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=488466 IF722_RS10440 WP_240025164.1 2106550..2106945(-) (ssb) [Staphylococcus aureus strain NAS_AN_157]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTAGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATGAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985