Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   IF722_RS07520 Genome accession   NZ_CP062360
Coordinates   1567260..1567706 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_157     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1562260..1572706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF722_RS07490 (IF722_07445) gcvPA 1563225..1564571 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  IF722_RS07495 (IF722_07450) gcvT 1564591..1565682 (-) 1092 WP_072491749.1 glycine cleavage system aminomethyltransferase GcvT -
  IF722_RS07500 (IF722_07455) - 1565841..1566365 (-) 525 WP_029549655.1 shikimate kinase -
  IF722_RS07505 (IF722_07460) - 1566355..1566501 (-) 147 WP_001789879.1 hypothetical protein -
  IF722_RS07510 (IF722_07465) comGF 1566598..1567056 (-) 459 WP_072491748.1 competence type IV pilus minor pilin ComGF Machinery gene
  IF722_RS07515 (IF722_07470) comGE 1566974..1567273 (-) 300 WP_172452442.1 competence protein ComGE Machinery gene
  IF722_RS07520 (IF722_07475) comGD 1567260..1567706 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  IF722_RS07525 (IF722_07480) comGC 1567684..1567995 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  IF722_RS07530 (IF722_07485) comGB 1568009..1569079 (-) 1071 WP_000776418.1 competence type IV pilus assembly protein ComGB Machinery gene
  IF722_RS07535 (IF722_07490) comGA 1569051..1570025 (-) 975 WP_240025101.1 competence type IV pilus ATPase ComGA Machinery gene
  IF722_RS07540 (IF722_07495) - 1570077..1570700 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  IF722_RS07545 (IF722_07500) - 1570697..1571026 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  IF722_RS07550 (IF722_07505) - 1571026..1572012 (-) 987 WP_000161315.1 ROK family glucokinase -
  IF722_RS07555 (IF722_07510) - 1572009..1572212 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=488448 IF722_RS07520 WP_001796473.1 1567260..1567706(-) (comGD) [Staphylococcus aureus strain NAS_AN_157]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=488448 IF722_RS07520 WP_001796473.1 1567260..1567706(-) (comGD) [Staphylococcus aureus strain NAS_AN_157]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGACGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993