Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   IF722_RS04645 Genome accession   NZ_CP062360
Coordinates   955968..956954 (+) Length   328 a.a.
NCBI ID   WP_098817765.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_157     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 950968..961954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF722_RS04625 (IF722_04595) - 951338..952960 (+) 1623 WP_098817763.1 peptide ABC transporter substrate-binding protein -
  IF722_RS04630 (IF722_04600) trpS 953078..954067 (-) 990 WP_072491460.1 tryptophan--tRNA ligase -
  IF722_RS04635 (IF722_04605) spxA 954362..954757 (+) 396 WP_072491461.1 transcriptional regulator SpxA -
  IF722_RS04640 (IF722_04610) mecA 955128..955847 (+) 720 WP_001217728.1 adaptor protein MecA -
  IF722_RS04645 (IF722_04615) coiA 955968..956954 (+) 987 WP_098817765.1 competence protein CoiA family protein Machinery gene
  IF722_RS04650 (IF722_04620) pepF 957002..958810 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  IF722_RS04655 (IF722_04625) yjbH 959270..960076 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  IF722_RS04660 (IF722_04630) - 960099..960464 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  IF722_RS04665 (IF722_04635) - 960568..961161 (-) 594 WP_072491463.1 CYTH domain-containing protein -
  IF722_RS04670 (IF722_04640) - 961347..961694 (+) 348 WP_001242107.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38787.35 Da        Isoelectric Point: 9.6529

>NTDB_id=488440 IF722_RS04645 WP_098817765.1 955968..956954(+) (coiA) [Staphylococcus aureus strain NAS_AN_157]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=488440 IF722_RS04645 WP_098817765.1 955968..956954(+) (coiA) [Staphylococcus aureus strain NAS_AN_157]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

97.561

100

0.976
  coiA Staphylococcus aureus N315

97.561

100

0.976