Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   IF722_RS02780 Genome accession   NZ_CP062360
Coordinates   576787..577356 (+) Length   189 a.a.
NCBI ID   WP_240025298.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_157     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 571787..582356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF722_RS02755 (IF722_02730) cysE 573000..573647 (+) 648 WP_240025401.1 serine O-acetyltransferase -
  IF722_RS02760 (IF722_02735) cysS 573631..575031 (+) 1401 WP_072491339.1 cysteine--tRNA ligase -
  IF722_RS02765 (IF722_02740) - 575024..575428 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  IF722_RS02770 (IF722_02745) rlmB 575436..576182 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IF722_RS02775 (IF722_02750) - 576182..576706 (+) 525 WP_106875298.1 NYN domain-containing protein -
  IF722_RS02780 (IF722_02755) sigH 576787..577356 (+) 570 WP_240025298.1 RNA polymerase sigma factor Regulator
  IF722_RS02785 (IF722_02760) rpmG 577471..577614 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  IF722_RS02790 (IF722_02765) secE 577670..577852 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  IF722_RS02795 (IF722_02770) nusG 577865..578413 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  IF722_RS02800 (IF722_02775) rplK 578594..579016 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  IF722_RS02805 (IF722_02780) rplA 579224..579916 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  IF722_RS02810 (IF722_02785) rplJ 580188..580688 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  IF722_RS02815 (IF722_02790) rplL 580731..581099 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  IF722_RS02820 (IF722_02795) - 581274..581882 (+) 609 WP_000020308.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23081.95 Da        Isoelectric Point: 9.4995

>NTDB_id=488434 IF722_RS02780 WP_240025298.1 576787..577356(+) (sigH) [Staphylococcus aureus strain NAS_AN_157]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIQMYRSVQIFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=488434 IF722_RS02780 WP_240025298.1 576787..577356(+) (sigH) [Staphylococcus aureus strain NAS_AN_157]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACAGATGTATAGGTCGGTCCAAATATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAAAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974