Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   IF733_RS02390 Genome accession   NZ_CP062352
Coordinates   446343..446840 (+) Length   165 a.a.
NCBI ID   WP_001788897.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_233     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441343..451840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF733_RS02350 (IF733_02350) - 441387..442373 (+) 987 WP_000161311.1 ROK family glucokinase -
  IF733_RS02355 (IF733_02355) - 442373..442702 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  IF733_RS02360 (IF733_02360) - 442699..443322 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  IF733_RS02365 (IF733_02365) comGA 443374..444348 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  IF733_RS02370 (IF733_02370) comGB 444320..445390 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  IF733_RS02375 (IF733_02375) comGC 445404..445715 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  IF733_RS02380 (IF733_02380) comGD 445693..446139 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  IF733_RS02385 (IF733_02385) comGE 446126..446425 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  IF733_RS02390 (IF733_02390) comGF 446343..446840 (+) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  IF733_RS02395 (IF733_02395) - 446937..447083 (+) 147 WP_001792109.1 hypothetical protein -
  IF733_RS02400 (IF733_02400) - 447073..447597 (+) 525 WP_001015120.1 shikimate kinase -
  IF733_RS02405 (IF733_02405) gcvT 447756..448847 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  IF733_RS02410 (IF733_02410) gcvPA 448867..450213 (+) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  IF733_RS02415 (IF733_02415) gcvPB 450206..451678 (+) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19181.99 Da        Isoelectric Point: 10.1964

>NTDB_id=488277 IF733_RS02390 WP_001788897.1 446343..446840(+) (comGF) [Staphylococcus aureus strain NAS_AN_233]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISIILLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDKNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=488277 IF733_RS02390 WP_001788897.1 446343..446840(+) (comGF) [Staphylococcus aureus strain NAS_AN_233]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAATTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAAAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(69-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

100

100

1
  comGF Staphylococcus aureus MW2

96.364

100

0.964