Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IF736_RS13055 Genome accession   NZ_CP062350
Coordinates   2625746..2626141 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_250     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2620746..2631141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF736_RS13025 (IF736_12945) - 2622004..2622408 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  IF736_RS13030 (IF736_12950) - 2622746..2622838 (+) 93 WP_001790611.1 hypothetical protein -
  IF736_RS13035 (IF736_12955) - 2622970..2623203 (+) 234 WP_000384523.1 DUF1146 family protein -
  IF736_RS13040 (IF736_12960) murA 2623314..2624579 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IF736_RS13045 (IF736_12965) fabZ 2624613..2625053 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IF736_RS13050 (IF736_12970) - 2625112..2625552 (-) 441 WP_240018945.1 YwpF-like family protein -
  IF736_RS13055 (IF736_12975) ssb 2625746..2626141 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  IF736_RS13060 (IF736_12980) sceD 2626529..2627224 (+) 696 WP_047928572.1 lytic transglycosylase SceD -
  IF736_RS13065 (IF736_12985) tenA 2627748..2628437 (+) 690 WP_000396077.1 thiaminase II -
  IF736_RS13070 (IF736_12990) thiD 2628430..2629260 (+) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IF736_RS13075 (IF736_12995) thiM 2629244..2630044 (+) 801 WP_240018946.1 hydroxyethylthiazole kinase -
  IF736_RS13080 (IF736_13000) thiE 2630037..2630678 (+) 642 WP_000483155.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=488257 IF736_RS13055 WP_000932694.1 2625746..2626141(+) (ssb) [Staphylococcus aureus strain NAS_AN_250]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=488257 IF736_RS13055 WP_000932694.1 2625746..2626141(+) (ssb) [Staphylococcus aureus strain NAS_AN_250]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992